通过 IRMPD 光谱和补充 ab Initio 计算确定 Zn2+、Cu2+ 和 Fe2+ 与谷胱甘肽络合的结构

IF 2.9 3区 化学 Q3 CHEMISTRY, PHYSICAL Physical Chemistry Chemical Physics Pub Date : 2024-11-18 DOI:10.1039/d4cp03848g
Samantha K. Walker, Amanda R. Bubas, Brandon C. Stevenson, Evan H. Perez, Giel Berden, Jonathan Martens, Jos Oomens, Peter B. Armentrout
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引用次数: 0

摘要

谷胱甘肽是一种生物含量丰富、具有氧化还原活性的三肽,可保护细胞免受氧化应激,并清除体内的有毒重金属。本研究利用自由电子激光进行红外多光子解离(IRMPD)作用光谱分析,研究了谷胱甘肽(GSH)与氧化还原活性金属锌、铜和铁的配位络合物。对于所有三种金属,金属二价与去质子化的 GSH 之间都形成了复合物 M(GSH-H)+。在使用模拟退火协议对构象空间进行彻底探索后,将实验得出的 IRMPD 光谱与在 MP2(全)/6-311+G(d,p)理论水平上计算得出的缩放谐振谱进行了比较。有趣的是,在 B3LYP 或 ωB97XD 水平上计算出的光谱与实验结果并不一致。这些发现为生物相关金属离子如何与谷胱甘肽配位提供了首个气相光谱证据。所有三种金属都有共同的光谱特征,然而,注意到三种金属之间共同特征强度的差异,就能评估每种金属对特定配位位点的偏好或特异性。此外,所有三种氧化还原活性金属都形成了半胱氨酸侧链的去质子化硫醇与金属中心配位的结构,这与硫醇位点参与生物相关氧化还原化学反应的情况一致。
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Structural Determination of Zn2+, Cu2+, and Fe2+ Complexed with Glutathione by IRMPD Spectroscopy and Complimentary ab Initio Calculations
Glutathione is a biologically abundant and redox active tripeptide that serves to protect cells from oxidative stress and rid the body of toxic heavy metals. The present study examines the coordination complexes of glutathione (GSH) with redox active metals, Zn, Cu, and Fe, using infrared multiple photon dissociation (IRMPD) action spectroscopy with a free electron laser. For all three metals, a complex between the metal dication and deprotonated GSH was formed, M(GSH-H)+. The experimental IRMPD spectra were compared to scaled harmonic vibrational spectra calculated at the MP2(full)/6-311+G(d,p) level of theory after thorough exploration of conformational space using a simulated annealing protocol. Interestingly, spectra calculated at the B3LYP or ωB97XD level do not match experiment as well. These findings offer the first gas-phase spectroscopic evidence for how the biologically relevant metal ions coordinate with glutathione. There are spectral features that are common to all three metals, however, noting the differences in the strengths of the common features between the three metals enables an assessment of the preference or specificity that each individual metal has for a given coordination site. Additionally, all three redox active metals form structures where the deprotonated thiol of the cysteine side chain coordinates with the metal center, which is consistent with the involvement of the thiol site in biologically relevant redox chemistry.
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来源期刊
Physical Chemistry Chemical Physics
Physical Chemistry Chemical Physics 化学-物理:原子、分子和化学物理
CiteScore
5.50
自引率
9.10%
发文量
2675
审稿时长
2.0 months
期刊介绍: Physical Chemistry Chemical Physics (PCCP) is an international journal co-owned by 19 physical chemistry and physics societies from around the world. This journal publishes original, cutting-edge research in physical chemistry, chemical physics and biophysical chemistry. To be suitable for publication in PCCP, articles must include significant innovation and/or insight into physical chemistry; this is the most important criterion that reviewers and Editors will judge against when evaluating submissions. The journal has a broad scope and welcomes contributions spanning experiment, theory, computation and data science. Topical coverage includes spectroscopy, dynamics, kinetics, statistical mechanics, thermodynamics, electrochemistry, catalysis, surface science, quantum mechanics, quantum computing and machine learning. Interdisciplinary research areas such as polymers and soft matter, materials, nanoscience, energy, surfaces/interfaces, and biophysical chemistry are welcomed if they demonstrate significant innovation and/or insight into physical chemistry. Joined experimental/theoretical studies are particularly appreciated when complementary and based on up-to-date approaches.
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