{"title":"Ab Initio 水的动态多样性和不变性。","authors":"Wei Tian, Chenyu Wang, Ke Zhou","doi":"10.1021/acs.jctc.4c01191","DOIUrl":null,"url":null,"abstract":"<p><p>Comprehending water dynamics is crucial in various fields, such as water desalination, ion separation, electrocatalysis, and biochemical processes. While ab initio molecular dynamics (AIMD) accurately portray water's structure, computing its dynamic properties over nanosecond time scales proves cost-prohibitive. This study employs machine learning potentials (MLPs) to accurately determine the dynamic properties of liquid water with ab initio accuracy. Our findings reveal diversity in the calculated diffusion coefficient (<i>D</i>) and viscosity of water (η) across different methodologies. Specifically, while the GGA, meta-GGA, and hybrid functional methods struggle to predict dynamic properties under ambient conditions, methods on the higher level of Jacob's ladder of DFT approximation perform significantly better. Intriguingly, we discovered that both <i>D</i> and η adhere to the established Stokes-Einstein (SE) relation for all of the ab initio water. The diversity observed across different methods can be attributed to distinct structural entropy, affirming the applicability of excess entropy scaling relations across all functionals. The correlation between <i>D</i> and η provides valuable insights for identifying the ideal temperature to accurately replicate the dynamic properties of liquid water. Furthermore, our findings can validate the rationale behind employing artificially high temperatures in the simulation of water via AIMD. These outcomes not only pave the path to designing better functionals for water but also underscore the significance of water's many-body characteristics.</p>","PeriodicalId":45,"journal":{"name":"Journal of Chemical Theory and Computation","volume":" ","pages":""},"PeriodicalIF":5.7000,"publicationDate":"2024-11-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"The Dynamic Diversity and Invariance of Ab Initio Water.\",\"authors\":\"Wei Tian, Chenyu Wang, Ke Zhou\",\"doi\":\"10.1021/acs.jctc.4c01191\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>Comprehending water dynamics is crucial in various fields, such as water desalination, ion separation, electrocatalysis, and biochemical processes. While ab initio molecular dynamics (AIMD) accurately portray water's structure, computing its dynamic properties over nanosecond time scales proves cost-prohibitive. 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The correlation between <i>D</i> and η provides valuable insights for identifying the ideal temperature to accurately replicate the dynamic properties of liquid water. Furthermore, our findings can validate the rationale behind employing artificially high temperatures in the simulation of water via AIMD. 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引用次数: 0
摘要
了解水动力学在海水淡化、离子分离、电催化和生化过程等各个领域都至关重要。虽然原子分子动力学(ab initio molecular dynamics,AIMD)能准确描绘水的结构,但在纳秒级时间尺度上计算水的动态特性却成本高昂。本研究采用机器学习势(MLP),以原子序数精度精确测定液态水的动态特性。我们的发现揭示了不同方法计算出的水的扩散系数(D)和粘度(η)的多样性。具体来说,虽然 GGA、元 GGA 和混合函数方法难以预测环境条件下的动态特性,但 DFT 近似雅各布阶梯更高层次的方法却有明显更好的表现。有趣的是,我们发现所有 ab initio 水的 D 和 η 都符合既定的斯托克斯-爱因斯坦(SE)关系。在不同方法中观察到的多样性可归因于不同的结构熵,这肯定了过量熵比例关系在所有函数中的适用性。D 和 η 之间的相关性为确定精确复制液态水动态特性的理想温度提供了宝贵的见解。此外,我们的研究结果还验证了在通过 AIMD 模拟水的过程中采用人工高温的合理性。这些成果不仅为设计更好的水函数铺平了道路,还强调了水的多体特性的重要性。
The Dynamic Diversity and Invariance of Ab Initio Water.
Comprehending water dynamics is crucial in various fields, such as water desalination, ion separation, electrocatalysis, and biochemical processes. While ab initio molecular dynamics (AIMD) accurately portray water's structure, computing its dynamic properties over nanosecond time scales proves cost-prohibitive. This study employs machine learning potentials (MLPs) to accurately determine the dynamic properties of liquid water with ab initio accuracy. Our findings reveal diversity in the calculated diffusion coefficient (D) and viscosity of water (η) across different methodologies. Specifically, while the GGA, meta-GGA, and hybrid functional methods struggle to predict dynamic properties under ambient conditions, methods on the higher level of Jacob's ladder of DFT approximation perform significantly better. Intriguingly, we discovered that both D and η adhere to the established Stokes-Einstein (SE) relation for all of the ab initio water. The diversity observed across different methods can be attributed to distinct structural entropy, affirming the applicability of excess entropy scaling relations across all functionals. The correlation between D and η provides valuable insights for identifying the ideal temperature to accurately replicate the dynamic properties of liquid water. Furthermore, our findings can validate the rationale behind employing artificially high temperatures in the simulation of water via AIMD. These outcomes not only pave the path to designing better functionals for water but also underscore the significance of water's many-body characteristics.
期刊介绍:
The Journal of Chemical Theory and Computation invites new and original contributions with the understanding that, if accepted, they will not be published elsewhere. Papers reporting new theories, methodology, and/or important applications in quantum electronic structure, molecular dynamics, and statistical mechanics are appropriate for submission to this Journal. Specific topics include advances in or applications of ab initio quantum mechanics, density functional theory, design and properties of new materials, surface science, Monte Carlo simulations, solvation models, QM/MM calculations, biomolecular structure prediction, and molecular dynamics in the broadest sense including gas-phase dynamics, ab initio dynamics, biomolecular dynamics, and protein folding. The Journal does not consider papers that are straightforward applications of known methods including DFT and molecular dynamics. The Journal favors submissions that include advances in theory or methodology with applications to compelling problems.