Moon Young Yang, Khuong Duy Mac, Hannah R Strzelinski, Samantha A Hoffman, Donghwa Kim, Soo-Kyung Kim, Judith Su, Stephen B Liggett, William A Goddard
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Metadynamics simulations revealed that the critical barrier to activation is ligand-induced opening of the G protein between the α-helical (AH) and Ras-like domains of Gα subunit from a precoupled TAS2R5-G protein state to the fully activated state. A moderate agonist opens the AH-Ras cleft from 22 Å to 31 Å with an energy gain of -4.8 kcal mol<sup>-1</sup>, making GDP water-exposed for signaling. A high-potency agonist had an energy gain of -11.1 kcal mol<sup>-1</sup>. The low-potency agonist is also exothermic for Gα opening, but with an energy gain of only -1.4 kcal mol<sup>-1</sup>. This demonstrates that TAS2R5 agonist-bound functional potencies are derived from energy gains in the transition from a precoupled complex at the level of Gα opening. Our experimental and computational study provides insights into the activation mechanism of signal transduction that provide a basis for rational design of new drugs.</p>","PeriodicalId":20548,"journal":{"name":"Proceedings of the National Academy of Sciences of the United States of America","volume":"121 48","pages":"e2409987121"},"PeriodicalIF":9.4000,"publicationDate":"2024-11-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Agonist activation to open the Gα subunit of the GPCR-G protein precoupled complex defines functional agonist activation of TAS2R5.\",\"authors\":\"Moon Young Yang, Khuong Duy Mac, Hannah R Strzelinski, Samantha A Hoffman, Donghwa Kim, Soo-Kyung Kim, Judith Su, Stephen B Liggett, William A Goddard\",\"doi\":\"10.1073/pnas.2409987121\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>G protein-coupled receptors (GPCRs) regulate multiple cellular responses and represent highly successful therapeutic targets. The mechanisms by which agonists activate the G protein are unclear for many GPCR families, including the bitter taste receptors (TAS2Rs). We ascertained TAS2R5 properties by live cell-based functional assays, direct binding affinity measurements using optical resonators, and atomistic molecular dynamics simulations. We focus on three agonists that exhibit a wide range of signal transduction in cells despite comparable ligand-receptor binding energies derived from direct experiment and computation. Metadynamics simulations revealed that the critical barrier to activation is ligand-induced opening of the G protein between the α-helical (AH) and Ras-like domains of Gα subunit from a precoupled TAS2R5-G protein state to the fully activated state. A moderate agonist opens the AH-Ras cleft from 22 Å to 31 Å with an energy gain of -4.8 kcal mol<sup>-1</sup>, making GDP water-exposed for signaling. A high-potency agonist had an energy gain of -11.1 kcal mol<sup>-1</sup>. The low-potency agonist is also exothermic for Gα opening, but with an energy gain of only -1.4 kcal mol<sup>-1</sup>. This demonstrates that TAS2R5 agonist-bound functional potencies are derived from energy gains in the transition from a precoupled complex at the level of Gα opening. 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引用次数: 0
摘要
G 蛋白偶联受体(GPCR)调节多种细胞反应,是非常成功的治疗靶点。对于包括苦味受体(TAS2Rs)在内的许多 GPCR 家族来说,激动剂激活 G 蛋白的机制尚不清楚。我们通过基于活细胞的功能测试、使用光学谐振器进行的直接结合亲和力测量以及原子分子动力学模拟,确定了 TAS2R5 的特性。我们重点研究了三种激动剂,尽管直接实验和计算得出的配体-受体结合能相当,但它们在细胞中的信号转导范围很广。元动力学模拟显示,激活的关键障碍是配体诱导 Gα 亚基的 α-螺旋(AH)和类 Ras 结构域之间的 G 蛋白从预偶联的 TAS2R5-G 蛋白状态开放到完全激活状态。中度激动剂可将 AH-Ras 裂隙从 22 Å 打开到 31 Å,能量增益为 -4.8 kcal mol-1,从而使 GDP 在信号传导过程中露出水面。高能激动剂的能量增益为-11.1 kcal mol-1。低效激动剂对 Gα 开放也有放热作用,但能量增益仅为-1.4 kcal mol-1。这表明,TAS2R5 与激动剂结合的功能效力来自于 Gα 开放水平的前偶联复合物转变过程中的能量增益。我们的实验和计算研究深入揭示了信号转导的激活机制,为合理设计新药提供了基础。
Agonist activation to open the Gα subunit of the GPCR-G protein precoupled complex defines functional agonist activation of TAS2R5.
G protein-coupled receptors (GPCRs) regulate multiple cellular responses and represent highly successful therapeutic targets. The mechanisms by which agonists activate the G protein are unclear for many GPCR families, including the bitter taste receptors (TAS2Rs). We ascertained TAS2R5 properties by live cell-based functional assays, direct binding affinity measurements using optical resonators, and atomistic molecular dynamics simulations. We focus on three agonists that exhibit a wide range of signal transduction in cells despite comparable ligand-receptor binding energies derived from direct experiment and computation. Metadynamics simulations revealed that the critical barrier to activation is ligand-induced opening of the G protein between the α-helical (AH) and Ras-like domains of Gα subunit from a precoupled TAS2R5-G protein state to the fully activated state. A moderate agonist opens the AH-Ras cleft from 22 Å to 31 Å with an energy gain of -4.8 kcal mol-1, making GDP water-exposed for signaling. A high-potency agonist had an energy gain of -11.1 kcal mol-1. The low-potency agonist is also exothermic for Gα opening, but with an energy gain of only -1.4 kcal mol-1. This demonstrates that TAS2R5 agonist-bound functional potencies are derived from energy gains in the transition from a precoupled complex at the level of Gα opening. Our experimental and computational study provides insights into the activation mechanism of signal transduction that provide a basis for rational design of new drugs.
期刊介绍:
The Proceedings of the National Academy of Sciences (PNAS), a peer-reviewed journal of the National Academy of Sciences (NAS), serves as an authoritative source for high-impact, original research across the biological, physical, and social sciences. With a global scope, the journal welcomes submissions from researchers worldwide, making it an inclusive platform for advancing scientific knowledge.