Matini-Net:用于特征工程和深度神经网络设计的多功能材料信息学研究框架。

IF 5.6 2区 化学 Q1 CHEMISTRY, MEDICINAL Journal of Chemical Information and Modeling Pub Date : 2024-11-21 DOI:10.1021/acs.jcim.4c01676
Myeonghun Lee, Taehyun Park, Kyoungmin Min
{"title":"Matini-Net:用于特征工程和深度神经网络设计的多功能材料信息学研究框架。","authors":"Myeonghun Lee, Taehyun Park, Kyoungmin Min","doi":"10.1021/acs.jcim.4c01676","DOIUrl":null,"url":null,"abstract":"<p><p>In this study, we introduced Matini-Net, which is a versatile framework for feature engineering and automated architecture design for materials informatics research using deep neural networks. Matini-Net provides the flexibility to design feature-based, graph-based, and combinations of these models, accommodating both single- and multimodal model architectures. For validation, we performed a performance evaluation on the MatBench benchmarking dataset of five properties, targeting five types of regression architectures that can be designed using Matini-Net. When applied to each of the five material property datasets, the best model performance for the various architectures exhibited <i>R</i><sup>2</sup> > 0.84. This highlights the usefulness and flexibility of Matini-Net for accelerating materials discovery. Specifically, this framework was developed for researchers with limited experience in deep learning to easily apply it to research through automated feature engineering, hyperparameter tuning, and network construction. Moreover, Matini-Net improves the model interpretability by performing an importance analysis of the selected features. We believe that by employing Matini-Net, machine and deep learning can be applied more easily and effectively in various types of materials research.</p>","PeriodicalId":44,"journal":{"name":"Journal of Chemical Information and Modeling ","volume":" ","pages":""},"PeriodicalIF":5.6000,"publicationDate":"2024-11-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Matini-Net: Versatile Material Informatics Research Framework for Feature Engineering and Deep Neural Network Design.\",\"authors\":\"Myeonghun Lee, Taehyun Park, Kyoungmin Min\",\"doi\":\"10.1021/acs.jcim.4c01676\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>In this study, we introduced Matini-Net, which is a versatile framework for feature engineering and automated architecture design for materials informatics research using deep neural networks. Matini-Net provides the flexibility to design feature-based, graph-based, and combinations of these models, accommodating both single- and multimodal model architectures. For validation, we performed a performance evaluation on the MatBench benchmarking dataset of five properties, targeting five types of regression architectures that can be designed using Matini-Net. When applied to each of the five material property datasets, the best model performance for the various architectures exhibited <i>R</i><sup>2</sup> > 0.84. This highlights the usefulness and flexibility of Matini-Net for accelerating materials discovery. Specifically, this framework was developed for researchers with limited experience in deep learning to easily apply it to research through automated feature engineering, hyperparameter tuning, and network construction. Moreover, Matini-Net improves the model interpretability by performing an importance analysis of the selected features. We believe that by employing Matini-Net, machine and deep learning can be applied more easily and effectively in various types of materials research.</p>\",\"PeriodicalId\":44,\"journal\":{\"name\":\"Journal of Chemical Information and Modeling \",\"volume\":\" \",\"pages\":\"\"},\"PeriodicalIF\":5.6000,\"publicationDate\":\"2024-11-21\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Journal of Chemical Information and Modeling \",\"FirstCategoryId\":\"92\",\"ListUrlMain\":\"https://doi.org/10.1021/acs.jcim.4c01676\",\"RegionNum\":2,\"RegionCategory\":\"化学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q1\",\"JCRName\":\"CHEMISTRY, MEDICINAL\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of Chemical Information and Modeling ","FirstCategoryId":"92","ListUrlMain":"https://doi.org/10.1021/acs.jcim.4c01676","RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"CHEMISTRY, MEDICINAL","Score":null,"Total":0}
引用次数: 0

摘要

在这项研究中,我们介绍了 Matini-Net,它是一个多功能框架,用于利用深度神经网络进行材料信息学研究的特征工程和自动架构设计。Matini-Net 可灵活设计基于特征的模型、基于图的模型以及这些模型的组合,同时适用于单模态和多模态模型架构。为了进行验证,我们在 MatBench 基准数据集上对五种属性进行了性能评估,目标是使用 Matini-Net 设计的五种回归架构。当应用于五个材料属性数据集时,各种架构的最佳模型性能表现为 R2 > 0.84。这凸显了 MatiniNet 在加速材料发现方面的实用性和灵活性。具体来说,该框架是为在深度学习方面经验有限的研究人员开发的,他们可以通过自动特征工程、超参数调整和网络构建,轻松地将其应用到研究中。此外,Matini-Net 还通过对所选特征进行重要性分析来提高模型的可解释性。我们相信,通过使用 Matini-Net,机器学习和深度学习可以更轻松、更有效地应用于各类材料研究。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
查看原文
分享 分享
微信好友 朋友圈 QQ好友 复制链接
本刊更多论文
Matini-Net: Versatile Material Informatics Research Framework for Feature Engineering and Deep Neural Network Design.

In this study, we introduced Matini-Net, which is a versatile framework for feature engineering and automated architecture design for materials informatics research using deep neural networks. Matini-Net provides the flexibility to design feature-based, graph-based, and combinations of these models, accommodating both single- and multimodal model architectures. For validation, we performed a performance evaluation on the MatBench benchmarking dataset of five properties, targeting five types of regression architectures that can be designed using Matini-Net. When applied to each of the five material property datasets, the best model performance for the various architectures exhibited R2 > 0.84. This highlights the usefulness and flexibility of Matini-Net for accelerating materials discovery. Specifically, this framework was developed for researchers with limited experience in deep learning to easily apply it to research through automated feature engineering, hyperparameter tuning, and network construction. Moreover, Matini-Net improves the model interpretability by performing an importance analysis of the selected features. We believe that by employing Matini-Net, machine and deep learning can be applied more easily and effectively in various types of materials research.

求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
CiteScore
9.80
自引率
10.70%
发文量
529
审稿时长
1.4 months
期刊介绍: The Journal of Chemical Information and Modeling publishes papers reporting new methodology and/or important applications in the fields of chemical informatics and molecular modeling. Specific topics include the representation and computer-based searching of chemical databases, molecular modeling, computer-aided molecular design of new materials, catalysts, or ligands, development of new computational methods or efficient algorithms for chemical software, and biopharmaceutical chemistry including analyses of biological activity and other issues related to drug discovery. Astute chemists, computer scientists, and information specialists look to this monthly’s insightful research studies, programming innovations, and software reviews to keep current with advances in this integral, multidisciplinary field. As a subscriber you’ll stay abreast of database search systems, use of graph theory in chemical problems, substructure search systems, pattern recognition and clustering, analysis of chemical and physical data, molecular modeling, graphics and natural language interfaces, bibliometric and citation analysis, and synthesis design and reactions databases.
期刊最新文献
Matini-Net: Versatile Material Informatics Research Framework for Feature Engineering and Deep Neural Network Design. Exploring the Potential of Adaptive, Local Machine Learning in Comparison to the Prediction Performance of Global Models: A Case Study from Bayer's Caco-2 Permeability Database. ConfRank: Improving GFN-FF Conformer Ranking with Pairwise Training. Delving into Macrolide Binding Affinities and Associated Structural Modulations in Erythromycin Esterase C: Insights into the Venus Flytrap Mechanism. Identification of Macrophage-Associated Novel Drug Targets in Atherosclerosis Based on Integrated Transcriptome Features.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
已复制链接
已复制链接
快去分享给好友吧!
我知道了
×
扫码分享
扫码分享
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1