QianLi Liu , FeiFei Liu , GuoQing Li , KaiDong Liu , ZhenChi Huang , ShanNi Cao , JunDi Zhong
{"title":"Calonectria dianii 的全基因组测序:引起桉树叶枯病的一种重要病原体。","authors":"QianLi Liu , FeiFei Liu , GuoQing Li , KaiDong Liu , ZhenChi Huang , ShanNi Cao , JunDi Zhong","doi":"10.1016/j.ygeno.2024.110967","DOIUrl":null,"url":null,"abstract":"<div><div>Eucalyptus leaf blight, caused by <em>Calonectria</em> spp., significantly impacts the global <em>Eucalyptus</em> industry. <em>Calonectria dianii</em>, as one of the predominant causal agents, poses a serious threat to <em>Eucalyptus</em> plantations in China. To enhance our understanding of its pathogenic mechanisms, we sequenced the genome of <em>C. dianii</em> RIFT 6520 using both Nanopore PromethION and Illumina NovaSeq PE150 platforms. Our analysis revealed a 61.76 Mb genome comprising 30 contigs with an N50 of 4,726,631 bp, a GC content of 49.74 %, and 10,184 predicted coding genes. Additionally, comparative genomic analysis between <em>C. dianii</em> and seven other significant plant-pathogenic <em>Calonectria</em> species was conducted. This analysis provided insights into the evolutionary relationships and adaptive mechanisms of these pathogens. Our study elucidates the genetic basis of <em>C. dianii's</em> pathogenicity and evolution, providing valuable information for future research on its molecular interactions with <em>Eucalyptus</em> and aiding in the development of precise control measures for Eucalyptus leaf blight.</div></div>","PeriodicalId":12521,"journal":{"name":"Genomics","volume":"116 6","pages":"Article 110967"},"PeriodicalIF":3.4000,"publicationDate":"2024-11-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Whole-Genome sequencing of Calonectria dianii: An important pathogen causing Eucalyptus leaf blight\",\"authors\":\"QianLi Liu , FeiFei Liu , GuoQing Li , KaiDong Liu , ZhenChi Huang , ShanNi Cao , JunDi Zhong\",\"doi\":\"10.1016/j.ygeno.2024.110967\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><div>Eucalyptus leaf blight, caused by <em>Calonectria</em> spp., significantly impacts the global <em>Eucalyptus</em> industry. <em>Calonectria dianii</em>, as one of the predominant causal agents, poses a serious threat to <em>Eucalyptus</em> plantations in China. To enhance our understanding of its pathogenic mechanisms, we sequenced the genome of <em>C. dianii</em> RIFT 6520 using both Nanopore PromethION and Illumina NovaSeq PE150 platforms. Our analysis revealed a 61.76 Mb genome comprising 30 contigs with an N50 of 4,726,631 bp, a GC content of 49.74 %, and 10,184 predicted coding genes. Additionally, comparative genomic analysis between <em>C. dianii</em> and seven other significant plant-pathogenic <em>Calonectria</em> species was conducted. This analysis provided insights into the evolutionary relationships and adaptive mechanisms of these pathogens. Our study elucidates the genetic basis of <em>C. dianii's</em> pathogenicity and evolution, providing valuable information for future research on its molecular interactions with <em>Eucalyptus</em> and aiding in the development of precise control measures for Eucalyptus leaf blight.</div></div>\",\"PeriodicalId\":12521,\"journal\":{\"name\":\"Genomics\",\"volume\":\"116 6\",\"pages\":\"Article 110967\"},\"PeriodicalIF\":3.4000,\"publicationDate\":\"2024-11-01\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Genomics\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://www.sciencedirect.com/science/article/pii/S0888754324001885\",\"RegionNum\":2,\"RegionCategory\":\"生物学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q2\",\"JCRName\":\"BIOTECHNOLOGY & APPLIED MICROBIOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Genomics","FirstCategoryId":"99","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S0888754324001885","RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"BIOTECHNOLOGY & APPLIED MICROBIOLOGY","Score":null,"Total":0}
Whole-Genome sequencing of Calonectria dianii: An important pathogen causing Eucalyptus leaf blight
Eucalyptus leaf blight, caused by Calonectria spp., significantly impacts the global Eucalyptus industry. Calonectria dianii, as one of the predominant causal agents, poses a serious threat to Eucalyptus plantations in China. To enhance our understanding of its pathogenic mechanisms, we sequenced the genome of C. dianii RIFT 6520 using both Nanopore PromethION and Illumina NovaSeq PE150 platforms. Our analysis revealed a 61.76 Mb genome comprising 30 contigs with an N50 of 4,726,631 bp, a GC content of 49.74 %, and 10,184 predicted coding genes. Additionally, comparative genomic analysis between C. dianii and seven other significant plant-pathogenic Calonectria species was conducted. This analysis provided insights into the evolutionary relationships and adaptive mechanisms of these pathogens. Our study elucidates the genetic basis of C. dianii's pathogenicity and evolution, providing valuable information for future research on its molecular interactions with Eucalyptus and aiding in the development of precise control measures for Eucalyptus leaf blight.
期刊介绍:
Genomics is a forum for describing the development of genome-scale technologies and their application to all areas of biological investigation.
As a journal that has evolved with the field that carries its name, Genomics focuses on the development and application of cutting-edge methods, addressing fundamental questions with potential interest to a wide audience. Our aim is to publish the highest quality research and to provide authors with rapid, fair and accurate review and publication of manuscripts falling within our scope.