Arvind B. Chavhan , Hemamalini Kola , Babitha Bobba , Yogendra Kumar Verma , Mahendra Kumar Verma
{"title":"芒果苷与醛糖还原酶亲和力的分子内研究和体外验证:探索治疗糖尿病视网膜病变的潜力","authors":"Arvind B. Chavhan , Hemamalini Kola , Babitha Bobba , Yogendra Kumar Verma , Mahendra Kumar Verma","doi":"10.1016/j.compbiolchem.2024.108281","DOIUrl":null,"url":null,"abstract":"<div><div>Type II Diabetes mellitus (T2DM) and associated complications primarily diabetic retinopathy cases are rising with an alarming rate. Prolong hyperglycemia along with the aldose reductase (AR) activity play a pivotal role in the development of oxidative stress in the aqueous humor and diabetic retinopathy. AR catalyzes conversion of glucose into sorbitol and or fructose get diffuse into lens leading to impaired electrolyte balance and cataract formation. Here in the study, affinity of mangiferin was evaluated first using in silico approaches (Docking studies) and then validated via isothermal titration calorimetry. Here in the present study aim was to check the does mangiferin do have affinity with AR, does mangiferin inhibit the AR and polyol pathway as key pathway involve in the diabetic retinopathy. Both <em>in silico</em> and laboratory investigations were carried out to explore the affinity of mangiferin with the aldose reductase. Swiss target prediction study showed that the AR is prime target of mangiferin in the human proteome. The molecular docking study and affinity searches were performed to seek the bonding pattern and forces involved. Docking (affinity 34.37 kcal/mol) for AR pose 1 was reported superior over the AR pose 2 (affinity −35.46 kcal/mol) against mangiferin. Mangiferin showed significant AR inhibition where IC<sub>50</sub> reported 67.711 µg/ml and highest inhibition was reported at 300 µg/ml i.e. 86.44 %. On the contrary, Quercetin showed much higher inhibition of aldose reductase at similar concentration i.e. 94.47 % at 300 µg/ml with IC<sub>50</sub> 59.6014 µg/ml. Here, AR pose 1 showed higher affinity with the mangiferin and confirmed via Isothermal Titration Calorimetry clearly showed higher binding affinity parameters. Binding affinity of AR pose 1 with the mangiferin was higher as showed with affinity parameter determined via ITC i.e. floating association constant (Ka) reported 6.47×10<sup>6</sup>, binding enthalpy (ΔH) −46.11 kJ/mol and higher binding sites (n) i.e. 1.84. Findings demonstrates that the mangiferin is promising AR inhibitor with the ADME prediction (CL<sub>R</sub> 1.119 ml/min and t<sub>1/2</sub> 1.162 h).</div></div>","PeriodicalId":10616,"journal":{"name":"Computational Biology and Chemistry","volume":"114 ","pages":"Article 108281"},"PeriodicalIF":2.6000,"publicationDate":"2024-11-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"In-silico study and in-vitro validations for an affinity of mangiferin with aldose reductase: Investigating potential in tackling diabetic retinopathy\",\"authors\":\"Arvind B. Chavhan , Hemamalini Kola , Babitha Bobba , Yogendra Kumar Verma , Mahendra Kumar Verma\",\"doi\":\"10.1016/j.compbiolchem.2024.108281\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><div>Type II Diabetes mellitus (T2DM) and associated complications primarily diabetic retinopathy cases are rising with an alarming rate. Prolong hyperglycemia along with the aldose reductase (AR) activity play a pivotal role in the development of oxidative stress in the aqueous humor and diabetic retinopathy. AR catalyzes conversion of glucose into sorbitol and or fructose get diffuse into lens leading to impaired electrolyte balance and cataract formation. Here in the study, affinity of mangiferin was evaluated first using in silico approaches (Docking studies) and then validated via isothermal titration calorimetry. Here in the present study aim was to check the does mangiferin do have affinity with AR, does mangiferin inhibit the AR and polyol pathway as key pathway involve in the diabetic retinopathy. Both <em>in silico</em> and laboratory investigations were carried out to explore the affinity of mangiferin with the aldose reductase. Swiss target prediction study showed that the AR is prime target of mangiferin in the human proteome. The molecular docking study and affinity searches were performed to seek the bonding pattern and forces involved. Docking (affinity 34.37 kcal/mol) for AR pose 1 was reported superior over the AR pose 2 (affinity −35.46 kcal/mol) against mangiferin. Mangiferin showed significant AR inhibition where IC<sub>50</sub> reported 67.711 µg/ml and highest inhibition was reported at 300 µg/ml i.e. 86.44 %. On the contrary, Quercetin showed much higher inhibition of aldose reductase at similar concentration i.e. 94.47 % at 300 µg/ml with IC<sub>50</sub> 59.6014 µg/ml. Here, AR pose 1 showed higher affinity with the mangiferin and confirmed via Isothermal Titration Calorimetry clearly showed higher binding affinity parameters. Binding affinity of AR pose 1 with the mangiferin was higher as showed with affinity parameter determined via ITC i.e. floating association constant (Ka) reported 6.47×10<sup>6</sup>, binding enthalpy (ΔH) −46.11 kJ/mol and higher binding sites (n) i.e. 1.84. 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引用次数: 0
摘要
II 型糖尿病(T2DM)及相关并发症(主要是糖尿病视网膜病变)的发病率正在以惊人的速度上升。长期的高血糖以及醛糖还原酶(AR)的活性在房水氧化应激和糖尿病视网膜病变的发生中起着关键作用。醛糖还原酶催化葡萄糖转化为山梨醇和果糖,并扩散到晶状体中,导致电解质平衡受损和白内障形成。在本研究中,首先使用硅学方法(对接研究)评估了芒果苷的亲和性,然后通过等温滴定量热法进行了验证。本研究的目的是检测芒果苷是否与 AR 有亲和力,芒果苷是否能抑制 AR 以及糖尿病视网膜病变的关键途径多元醇途径。为了探究芒果苷与醛糖还原酶的亲和力,我们进行了硅学和实验室研究。瑞士目标预测研究表明,在人类蛋白质组中,AR 是芒果苷的主要目标。研究人员进行了分子对接研究和亲和力搜索,以寻找其中的键合模式和作用力。与芒果苷相比,AR 1 型的对接(亲和力为 34.37 kcal/mol)优于 AR 2 型(亲和力为 -35.46 kcal/mol)。芒果苷对 AR 有明显的抑制作用,IC50 值为 67.711 µg/ml,在 300 µg/ml 时抑制率最高,为 86.44%。相反,槲皮素在类似浓度下对醛糖还原酶的抑制率更高,在 300 µg/ml 时为 94.47%,IC50 为 59.6014 µg/ml。在这里,AR 样式 1 与芒果苷表现出更高的亲和力,并通过等温滴定量热法证实了这一点,即明显表现出更高的结合亲和力参数。AR pose 1 与芒果苷的结合亲和力更高,通过等温滴定量热仪测定的亲和力参数显示了这一点,即浮动结合常数(Ka)为 6.47×106,结合焓(ΔH)为 -46.11 kJ/mol,结合位点(n)为 1.84。研究结果表明,根据 ADME 预测(CLR 1.119 毫升/分钟和 t1/2 1.162 小时),芒果苷是一种很有前景的 AR 抑制剂。
In-silico study and in-vitro validations for an affinity of mangiferin with aldose reductase: Investigating potential in tackling diabetic retinopathy
Type II Diabetes mellitus (T2DM) and associated complications primarily diabetic retinopathy cases are rising with an alarming rate. Prolong hyperglycemia along with the aldose reductase (AR) activity play a pivotal role in the development of oxidative stress in the aqueous humor and diabetic retinopathy. AR catalyzes conversion of glucose into sorbitol and or fructose get diffuse into lens leading to impaired electrolyte balance and cataract formation. Here in the study, affinity of mangiferin was evaluated first using in silico approaches (Docking studies) and then validated via isothermal titration calorimetry. Here in the present study aim was to check the does mangiferin do have affinity with AR, does mangiferin inhibit the AR and polyol pathway as key pathway involve in the diabetic retinopathy. Both in silico and laboratory investigations were carried out to explore the affinity of mangiferin with the aldose reductase. Swiss target prediction study showed that the AR is prime target of mangiferin in the human proteome. The molecular docking study and affinity searches were performed to seek the bonding pattern and forces involved. Docking (affinity 34.37 kcal/mol) for AR pose 1 was reported superior over the AR pose 2 (affinity −35.46 kcal/mol) against mangiferin. Mangiferin showed significant AR inhibition where IC50 reported 67.711 µg/ml and highest inhibition was reported at 300 µg/ml i.e. 86.44 %. On the contrary, Quercetin showed much higher inhibition of aldose reductase at similar concentration i.e. 94.47 % at 300 µg/ml with IC50 59.6014 µg/ml. Here, AR pose 1 showed higher affinity with the mangiferin and confirmed via Isothermal Titration Calorimetry clearly showed higher binding affinity parameters. Binding affinity of AR pose 1 with the mangiferin was higher as showed with affinity parameter determined via ITC i.e. floating association constant (Ka) reported 6.47×106, binding enthalpy (ΔH) −46.11 kJ/mol and higher binding sites (n) i.e. 1.84. Findings demonstrates that the mangiferin is promising AR inhibitor with the ADME prediction (CLR 1.119 ml/min and t1/2 1.162 h).
期刊介绍:
Computational Biology and Chemistry publishes original research papers and review articles in all areas of computational life sciences. High quality research contributions with a major computational component in the areas of nucleic acid and protein sequence research, molecular evolution, molecular genetics (functional genomics and proteomics), theory and practice of either biology-specific or chemical-biology-specific modeling, and structural biology of nucleic acids and proteins are particularly welcome. Exceptionally high quality research work in bioinformatics, systems biology, ecology, computational pharmacology, metabolism, biomedical engineering, epidemiology, and statistical genetics will also be considered.
Given their inherent uncertainty, protein modeling and molecular docking studies should be thoroughly validated. In the absence of experimental results for validation, the use of molecular dynamics simulations along with detailed free energy calculations, for example, should be used as complementary techniques to support the major conclusions. Submissions of premature modeling exercises without additional biological insights will not be considered.
Review articles will generally be commissioned by the editors and should not be submitted to the journal without explicit invitation. However prospective authors are welcome to send a brief (one to three pages) synopsis, which will be evaluated by the editors.