衰老相关 LncRNAs:卵巢癌预后的先驱指标

IF 3.7 Q2 GENETICS & HEREDITY Phenomics (Cham, Switzerland) Pub Date : 2024-09-26 eCollection Date: 2024-08-01 DOI:10.1007/s43657-024-00163-z
Shao-Bei Fan, Xiao-Feng Xie, Wang Wei, Tian Hua
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引用次数: 0

摘要

在妇科肿瘤学中,卵巢癌(OC)仍然是致死率最高的癌症,这凸显了它在公共卫生方面的重要性。我们的研究重点是长非编码RNA(lncRNA)在卵巢癌中的作用,尤其是对卵巢癌预后至关重要的衰老相关lncRNAs(SnRlncRNAs)。利用基因型-组织表达(GTEx)和癌症基因组图谱(TCGA)中的数据,SnRlncRNAs被分辨出来,随后利用共表达和差异表达分析、Cox回归和最小绝对收缩和选择算子(LASSO)建立了风险特征。该特征的稳健性通过与时间相关的接收者操作特征(ROC)和多变量 Cox 回归得到了验证,并在国际癌症基因组联盟(ICGC)中得到了进一步验证。基因组富集分析(GSEA)揭示了与风险组交织在一起的通路。ROC以及提名图和校准结果证明了该模型强大的预测准确性。特别重要的是,我们的模型优于几个常用的临床指标,如分期和分级。与其他组别相比,低危组别患者的免疫浸润程度更高,对药物的敏感性也各不相同。此外,根据 17 个 SnRlncRNAs 的表达情况,共识聚类将 OC 患者分为四个不同的组别,显示出不同的生存率。总之,这些发现强调了我们的模型的稳健性和可靠性,突出了其在风险评估中促进决策改进的潜力,并证明这些标记物可作为稳健、有效的生物标记物和预后工具,为预测OC对抗癌疗法的反应提供见解:在线版本包含补充材料,可在10.1007/s43657-024-00163-z上查阅。
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Senescence-Related LncRNAs: Pioneering Indicators for Ovarian Cancer Outcomes.

In gynecological oncology, ovarian cancer (OC) remains the most lethal, highlighting its significance in public health. Our research focused on the role of long non-coding RNA (lncRNA) in OC, particularly senescence-related lncRNAs (SnRlncRNAs), crucial for OC prognosis. Utilizing data from the genotype-tissue expression (GTEx) and cancer genome Atlas (TCGA), SnRlncRNAs were discerned and subsequently, a risk signature was sculpted using co-expression and differential expression analyses, Cox regression, and least absolute shrinkage and selection operator (LASSO). This signature's robustness was validated through time-dependent receiver operating characteristics (ROC), and multivariate Cox regression, with further validation in the international cancer genome consortium (ICGC). Gene set enrichment analyses (GSEA) unveiled pathways intertwined with risk groups. The ROC, alongside the nomogram and calibration outcomes, attested to the model's robust predictive accuracy. Of particular significance, our model has demonstrated superiority over several commonly utilized clinical indicators, such as stage and grade. Patients in the low-risk group demonstrated greater immune infiltration and varied drug sensitivities compared to other groups. Moreover, consensus clustering classified OC patients into four distinct groups based on the expression of 17 SnRlncRNAs, showing diverse survival rates. In conclusion, these findings underscored the robustness and reliability of our model and highlighted its potential for facilitating improved decision-making in the context of risk assessment, and demonstrated that these markers potentially served as robust, efficacious biomarkers and prognostic tools, offering insights into predicting OC response to anticancer therapeutics.

Supplementary information: The online version contains supplementary material available at 10.1007/s43657-024-00163-z.

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