基于全基因组鉴定和转录组分析的绿豆细胞色素 c 氧化酶编码基因的特征及其对镉胁迫的响应

IF 2.6 4区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Molecular Biology Reports Pub Date : 2024-11-26 DOI:10.1007/s11033-024-10102-w
Yan Leng, Zhuan-Bin Niu, Shao-Hua Liu, Fu-Jun Qiao, Gui-Fang Liu, Bin Cheng, Shi-Weng Li
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引用次数: 0

摘要

背景:细胞色素 c 氧化酶(COX)是植物电子传递链中的一个关键线粒体酶,与能量生产和胁迫响应有关。尽管 COX 非常重要,但豆科植物中 COX 的功能,尤其是在镉(Cd)等重金属胁迫下的功能,仍未得到充分研究:本研究根据绿豆(Vigna radiata (Linn.) R. Wilczek)的基因组注释文件鉴定了 COX 基因(COX s),并利用生物信息学方法分析了相关氨基酸序列的基因结构、理化性质和系统关系。检测了镉对绿豆根、茎和叶中 COX 转录水平和活性的影响,以了解绿豆 COX 对镉(Cd)胁迫的响应机制。转录组测序显示了组织特异性表达,其中根的表达水平最高。镉胁迫极大地改变了 VrCOXs 的表达和活性,尤其是在根和茎中,不同基因的反应各不相同:结论:VrCOXs 对镉胁迫的不同反应表明其在植物胁迫耐受机制中发挥作用。该研究深入揭示了豆科植物中 COXs 的功能,为进一步研究镉耐受机制奠定了基础,这对提高豆科植物产量和确保污染环境中的食品安全至关重要。
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Characterisation of cytochrome c oxidase-coding genes from mung bean and their response to cadmium stress based on genome-wide identification and transcriptome analysis.

Background: Cytochrome c oxidase (COX) is a crucial mitochondrial enzyme in the electron transport chain of plants, implicated in energy production and stress responses. Despite its importance, the function of COX in leguminous plants, especially under heavy metal stress like cadmium (Cd), remains understudied.

Methods and results: In this study, COX genes (COX s) were identified based on the genome annotation file in mung bean (Vigna radiata (Linn.) R. Wilczek), and the gene structure, physicochemical properties and systematic relationships of the relevant amino acid sequences were analyzed by using bioinformatics method. The effects of Cd on the transcription levels and activities of COX in mung bean roots, stems, and leaves were detected to understand the mechanism of COX in mung bean in response to cadmium (Cd) stress. Transcriptome sequencing revealed tissue-specific expression with roots showed the highest levels. Cd stress significantly altered the expression and activity of VrCOXs, particularly in roots and stems, with varied responses among different genes.

Conclusions: The differential response of VrCOX s to Cd stress indicates a role in the plant stress tolerance mechanism. The study provides insights into the function of COXs in legumes and a foundation for further research into Cd tolerance mechanisms, which could be vital for enhancing legume production and ensuring food safety in contaminated environments.

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来源期刊
Molecular Biology Reports
Molecular Biology Reports 生物-生化与分子生物学
CiteScore
5.00
自引率
0.00%
发文量
1048
审稿时长
5.6 months
期刊介绍: Molecular Biology Reports publishes original research papers and review articles that demonstrate novel molecular and cellular findings in both eukaryotes (animals, plants, algae, funghi) and prokaryotes (bacteria and archaea).The journal publishes results of both fundamental and translational research as well as new techniques that advance experimental progress in the field and presents original research papers, short communications and (mini-) reviews.
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