解码硬粒小麦抗坏血酸过氧化物酶 TdAPX7B-2 在非生物胁迫响应中的作用

IF 3.9 4区 生物学 Q1 GENETICS & HEREDITY Functional & Integrative Genomics Pub Date : 2024-11-28 DOI:10.1007/s10142-024-01505-w
Kaouthar Feki, Sana Tounsi, Hanen Kamoun, Abdulrahman Al-Hashim, Faiçal Brini
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引用次数: 0

摘要

APX 蛋白是在氧化应激过程中诱导的 H2O2 清除酶。在本研究的第一部分,我们通过全基因组分析广泛了解了硬质小麦的 APX 家族、TdAPX 及其相关的 TdAPX-R。研究结果表明,这些蛋白主要分为四个亚群。此外,外显子内含子结构和同源关系分析表明,TdAPX 和 TdAPX-R 基因在进化过程中相对保守。此外,在进化过程中,这些基因经历了纯化选择压力,并在节段上发生了重复。同时,对保守基序和多序列比对的分析表明,只有 TdAPX 蛋白的活性位点、血红素和阳离子结合所涉及的残基是保守的。继 RNA-seq 数据和调控元件分析之后,我们在本研究的第二部分重点研究了 TdAPX7B-2 的功能特征。qRT-PCR 数据显示,在暴露于盐、寒冷、干旱、金属和 ABA 处理的硬粒小麦叶片中,TdAPX7B-2 基本上是上调的。表达 TdAPX7B-2 的拟南芥品系对盐胁迫、直接诱导的氧化胁迫和重金属的耐受表型表现为根系发育、脯氨酸积累以及诱导抗氧化酶 CAT、SOD 和 POD 以维持无毒的 H2O2 水平。同样,转基因品系对盐胁迫和直接氧化胁迫的反应主要伴随着 AtNCED3、AtRD29A/B 和 AtERD1 的诱导。
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Decoding the role of durum wheat ascorbate peroxidase TdAPX7B-2 in abiotic stress response

APX proteins are H2O2-scavenging enzymes induced during oxidative stress. In the first part of this study, we provided an extensive knowledge on the APX family of Triticum durum, TdAPX and their related TdAPX-R, via the genome wide analysis. The outcomes showed that these proteins are clustered into four major subgroups. Furthermore, the exon–intron structure and the synteny analyses revealed that during evolution the genes TdAPX and TdAPX-R are relatively conserved. Besides, during their evolution, these genes underwent purifying selection pressure and were duplicated in segmental. In parallel, the analysis of the conserved motifs and the multiple sequence alignment demonstrated that the residues involved in the active sites, heme- and cations-binding are conserved only in TdAPX proteins. Following the RNA-seq data and the regulatory elements analyses, we focused in the second part of this study on the functional characterization of TdAPX7B-2. The qRT-PCR data showed the upregulation of TdAPX7B-2 essentially in leaves of durum wheat exposed to salt, cold, drought, metals and ABA treatments. The tolerance phenotype of the TdAPX7B-2-expressing Arabidopsis lines to salt, direct-induced oxidative stress and heavy metals was manifested by the development of root system, proline accumulation and induction of the antioxidant CAT, SOD and POD enzymes to maintain the non-toxic H2O2 levels. Likewise, the response to salt stress and direct-oxidative stress of the transgenic lines was accompanied mainly by the induction of AtNCED3, AtRD29A/B and AtERD1.

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来源期刊
CiteScore
3.50
自引率
3.40%
发文量
92
审稿时长
2 months
期刊介绍: Functional & Integrative Genomics is devoted to large-scale studies of genomes and their functions, including systems analyses of biological processes. The journal will provide the research community an integrated platform where researchers can share, review and discuss their findings on important biological questions that will ultimately enable us to answer the fundamental question: How do genomes work?
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