Vladimir O Pustylnyak, Alina M Perevalova, Lyudmila F Gulyaeva
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引用次数: 0
摘要
microrna在包括肺癌在内的癌症的发展中起着重要作用。最近的一项研究表明,吸烟是肺癌的关键危险因素,可增加肺鳞状细胞癌(LUSC)患者肿瘤组织中hsa-mir-301a的水平。本研究的目的是利用生物信息学分析探讨烟草烟雾增加LUSC肿瘤组织中hsa-mir-301a水平的机制。本研究使用了生物信息学工具和在线数据库,包括The Cancer Genome Atlas (TCGA)、LinkedOmics和Encyclopedia of RNA Interactomes (ENCORI)。我们的研究结果显示,LUSC组织中hsa-mir-301a的上调与吸烟暴露之间存在相关性。然而,没有发现患者吸烟状况与hsa-mir-301a宿主基因SKA2表达水平之间的相关性,这促使我们研究烟草烟雾暴露下microRNA加工的可能变化。使用在线平台的计算机结果表明,涉及rna结合蛋白DGCR8和FUS的转录后过程有助于吸烟LUSC患者成熟hsa-mir-301a水平的升高。我们的研究结果表明,rna结合蛋白在控制hsa-mir-301a的加工过程中起着关键作用,表明hsa-mir-301a在吸烟者的LUSC组织中具有复杂的调控作用。
Mechanistic Insights of hsa-mir-301a Regulation by Tobacco Smoke in Lung Squamous Cell Carcinoma: Evidence From Bioinformatics Analysis.
MicroRNAs play a significant role in the development of cancers, including lung cancer. A recent study revealed that smoking, a key risk factor for lung cancer, increased the levels of hsa-mir-301a in the tumor tissues of patients with lung squamous cell carcinoma (LUSC). The aim of the current study is to investigate the mechanism by which tobacco smoke increases hsa-mir-301a levels in LUSC tumor tissues using bioinformatics analysis. Bioinformatics tools and online databases, including The Cancer Genome Atlas (TCGA), LinkedOmics, and Encyclopedia of RNA Interactomes (ENCORI), were applied in this study. Our results showed a correlation between the upregulation of hsa-mir-301a in LUSC tissues and smoking exposure. However, no correlation was discovered between patients' smoking status and the expression level of the hsa-mir-301a host gene, SKA2, prompting us to investigate possible changes in microRNA processing under tobacco smoke exposure. In silico results using online platforms suggest that post-transcriptional processes, which involve the RNA-binding proteins DGCR8 and FUS, contribute to the elevation of mature hsa-mir-301a levels in smoking patients with LUSC. Our findings suggest that RNA-binding proteins play a key role in controlling the processing of hsa-mir-301a, indicating a complex regulation of hsa-mir-301a in the LUSC tissues of smokers.
期刊介绍:
Bioinformatics and Biology Insights is an open access, peer-reviewed journal that considers articles on bioinformatics methods and their applications which must pertain to biological insights. All papers should be easily amenable to biologists and as such help bridge the gap between theories and applications.