用于预测纳米结构表面杀菌效率的监督式机器学习工具。

IF 10.6 1区 生物学 Q1 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Journal of Nanobiotechnology Pub Date : 2024-12-03 DOI:10.1186/s12951-024-02974-8
Yaxi Chen, Hongyi Chen, Anthony Harker, Yuanchang Liu, Jie Huang
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引用次数: 0

摘要

耐多药细菌菌株的出现和迅速传播日益成为公共卫生关注的问题。受到荷叶和鲨鱼皮的天然杀菌表面的启发,人们越来越关注使用机械杀菌方法来制造具有抗菌和/或杀菌效果的表面。已有多项研究探讨了纳米结构表面在不同参数组合下的杀菌效果。然而,这些因素之间的相关性和协同作用仍然需要澄清。最近,机器学习(ML)能够基于数据进行预测或决策,已被用于生物材料领域,并取得了可喜的成果。在这项研究中,我们探索了ML在纳米技术中的应用,以研究纳米结构表面的抗菌潜力。通过提取已发表的文献,建立了纳米结构表面及其抗菌性能的数据集。基于文献综述和我们数据集的分布,我们选择70%的杀菌效率作为我们分类模型的实用基准,以平衡严格的杀菌性能和在不同条件下可实现的目标。随后,我们开发了一个ML分类模型,其预测能力的准确率为81%。进一步建立了回归模型来预测纳米结构表面的杀菌效率值。ML模型的特征重要性分析表明,纳米形貌特征对杀菌性能的影响大于材料性能,从而为纳米结构表面的机械杀菌作用原理提供了见解。总的来说,该ML模型工具可以帮助研究人员在实验前有效地选择和设计表面结构的参数,从而提高时效性,减少实验次数和相关成本。
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A supervised machine learning tool to predict the bactericidal efficiency of nanostructured surface.

The emergence and rapid spread of multidrug-resistant bacterial strains is a growing concern of public health. Inspired by the natural bactericidal surfaces of lotus leaves and shark skin, increasing attention has been focused on the use of mechano-bactericidal methods to create surfaces with antibacterial and/or bactericidal effects. There have been several studies exploring the bactericidal effect of nanostructured surfaces under various combinations of parameters. However, the correlation and synergies between these factors still need to be clarified. Recently machine learning (ML), which enables prediction or decision-making based on data, has been used in the field of biomaterials with promising results. In this study, we explored ML in nanotechnology to investigate the antimicrobial potential of nanostructured surfaces. A dataset of nanostructured surfaces and their antimicrobial properties was built by extracting the published literature. Based on the literature review and the distribution of our dataset, 70% bactericidal efficiency was selected as a practical benchmark for our classification model that balances stringent bactericidal performance with achievable targets in diverse conditions. Subsequently, we developed an ML classification model, which demonstrated an 81% accuracy in its predictive capability. A regression model was further developed to predict the value of bactericidal efficiency for nanostructured surfaces. Feature importance analysis of the ML models suggested that nanotopographical features have a greater influence on bactericidal properties than material properties, thus providing insight into the principles of the mechano-bactericidal effect of nanostructured surfaces. Overall, this ML model tool could help researchers to effectively select and design the parameters of the surface structure prior to experimentation, thereby improving the timeliness and reducing the number of experiments and the associated costs.

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来源期刊
Journal of Nanobiotechnology
Journal of Nanobiotechnology BIOTECHNOLOGY & APPLIED MICROBIOLOGY-NANOSCIENCE & NANOTECHNOLOGY
CiteScore
13.90
自引率
4.90%
发文量
493
审稿时长
16 weeks
期刊介绍: Journal of Nanobiotechnology is an open access peer-reviewed journal communicating scientific and technological advances in the fields of medicine and biology, with an emphasis in their interface with nanoscale sciences. The journal provides biomedical scientists and the international biotechnology business community with the latest developments in the growing field of Nanobiotechnology.
期刊最新文献
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