使用机器学习辅助的人体阴道液表面增强拉曼光谱快速诊断细菌性阴道病。

IF 5 2区 生物学 Q1 MICROBIOLOGY mSystems Pub Date : 2025-01-21 Epub Date: 2024-12-10 DOI:10.1128/msystems.01058-24
Xin-Ru Wen, Jia-Wei Tang, Jie Chen, Hui-Min Chen, Muhammad Usman, Quan Yuan, Yu-Rong Tang, Yu-Dong Zhang, Hui-Jin Chen, Liang Wang
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引用次数: 0

摘要

细菌性阴道病(BV)是一种由阴道内特定细菌过度生长引起的异常妇科疾病。本研究旨在通过将表面增强拉曼散射(SERS)与机器学习(ML)算法相结合,开发一种新的BV检测方法。通过BVBlue测试和临床显微镜对阴道液样本进行BV阳性和BV阴性的分类,并通过SERS光谱采集构建数据集。初步的SERS谱分析显示,特征峰特征存在显著差异。构建并优化了多个ML模型,其中卷积神经网络(CNN)模型的预测准确率最高,达到99%。使用梯度加权类激活映射(Grad-CAM)来突出图像中的重要区域进行预测。此外,对40名BV感染状态未知的参与者采集的阴道液样本的SERS谱进行盲测,与BVBlue Test结合临床显微镜的结果相比,CNN模型的预测准确率为90.75%。这种新技术简单、廉价、快速、准确地诊断细菌性阴道病,有可能补充目前临床实验室的诊断方法。重要性:细菌性阴道病(BV)的准确和快速诊断至关重要,因为它的患病率高,并与严重的健康并发症有关,包括性传播感染的风险增加和不良妊娠结局。传统的诊断方法虽然被广泛使用,但在主观性、复杂性和成本等方面存在明显的局限性。将SERS与ML相结合的新型诊断方法的开发提供了一个有前途的解决方案。CNN模型的高预测精度、成本效益和非凡的速度强调了其在临床环境中增强细菌性阴道炎诊断的巨大潜力。这种方法不仅解决了当前诊断工具的局限性,而且为医疗保健提供者提供了更容易获得和更可靠的选择,最终提高了患者护理和健康结果。
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Rapid diagnosis of bacterial vaginosis using machine-learning-assisted surface-enhanced Raman spectroscopy of human vaginal fluids.

Bacterial vaginosis (BV) is an abnormal gynecological condition caused by the overgrowth of specific bacteria in the vagina. This study aims to develop a novel method for BV detection by integrating surface-enhanced Raman scattering (SERS) with machine learning (ML) algorithms. Vaginal fluid samples were classified as BV positive or BV negative using the BVBlue Test and clinical microscopy, followed by SERS spectral acquisition to construct the data set. Preliminary SERS spectral analysis revealed notable disparities in characteristic peak features. Multiple ML models were constructed and optimized, with the convolutional neural network (CNN) model achieving the highest prediction accuracy at 99%. Gradient-weighted class activation mapping (Grad-CAM) was used to highlight important regions in the images for prediction. Moreover, the CNN model was blindly tested on SERS spectra of vaginal fluid samples collected from 40 participants with unknown BV infection status, achieving a prediction accuracy of 90.75% compared with the results of the BVBlue Test combined with clinical microscopy. This novel technique is simple, cheap, and rapid in accurately diagnosing bacterial vaginosis, potentially complementing current diagnostic methods in clinical laboratories.

Importance: The accurate and rapid diagnosis of bacterial vaginosis (BV) is crucial due to its high prevalence and association with serious health complications, including increased risk of sexually transmitted infections and adverse pregnancy outcomes. Although widely used, traditional diagnostic methods have significant limitations in subjectivity, complexity, and cost. The development of a novel diagnostic approach that integrates SERS with ML offers a promising solution. The CNN model's high prediction accuracy, cost-effectiveness, and extraordinary rapidity underscore its significant potential to enhance the diagnosis of BV in clinical settings. This method not only addresses the limitations of current diagnostic tools but also provides a more accessible and reliable option for healthcare providers, ultimately enhancing patient care and health outcomes.

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来源期刊
mSystems
mSystems Biochemistry, Genetics and Molecular Biology-Biochemistry
CiteScore
10.50
自引率
3.10%
发文量
308
审稿时长
13 weeks
期刊介绍: mSystems™ will publish preeminent work that stems from applying technologies for high-throughput analyses to achieve insights into the metabolic and regulatory systems at the scale of both the single cell and microbial communities. The scope of mSystems™ encompasses all important biological and biochemical findings drawn from analyses of large data sets, as well as new computational approaches for deriving these insights. mSystems™ will welcome submissions from researchers who focus on the microbiome, genomics, metagenomics, transcriptomics, metabolomics, proteomics, glycomics, bioinformatics, and computational microbiology. mSystems™ will provide streamlined decisions, while carrying on ASM''s tradition of rigorous peer review.
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