利用深度学习和空间分析进行角质层纳米纹理特征检测:一种用于皮肤屏障评估的无创工具。

IF 11.8 2区 生物学 Q1 MULTIDISCIPLINARY SCIENCES GigaScience Pub Date : 2024-01-02 DOI:10.1093/gigascience/giae095
Jen-Hung Wang, Jorge Pereda, Ching-Wen Du, Chia-Yu Chu, Maria Oberländer Christensen, Sanja Kezic, Ivone Jakasa, Jacob P Thyssen, Sreeja Satheesh, Edwin En-Te Hwu
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引用次数: 0

摘要

背景:角质细胞表面纳米级形貌(纳米纹理)最近已成为特应性皮炎(AD)等炎症性皮肤病的潜在生物标志物。这种评估方法涉及量化角质细胞纳米纹理图像中的圆形纳米尺寸物体(CNOs),通过剥离角质层(SC)胶带实现无创分析。目前识别 CNO 的方法依赖于具有特定几何标准的计算机视觉技术,但由于纳米成像技术易受环境噪声和角质层结构闭塞的影响,因此会产生误差:本研究招募了 45 名 AD 患者和 15 名健康对照者,根据他们的湿疹面积和严重程度指数评分平均分为 4 个严重程度组。随后,我们使用内部高速皮肤原子力显微镜收集了超过 1000 张角质细胞纳米纹理图像的数据集。该数据集用于训练最先进的深度学习对象检测器,以识别 CNO。此外,我们还采用了核密度估计器来分析 CNO 的空间分布,排除了 CNO 出现最少的无效区域,例如脊和闭塞区,从而提高了密度计算的准确性。经过微调后,我们的检测模型在检测 CNO 方面的总体准确率达到了 91.4%:通过将深度学习对象检测器与空间分析算法相结合,我们开发出了一种精确计算CNO密度的方法,称为有效角质细胞地形指数(ECTI)。ECTI 对纳米成像伪影表现出卓越的鲁棒性,通过有效区分不同严重程度的 AD SC 样本和健康对照组,为推进 AD 诊断提供了巨大的潜力。
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Stratum corneum nanotexture feature detection using deep learning and spatial analysis: a noninvasive tool for skin barrier assessment.

Background: Corneocyte surface nanoscale topography (nanotexture) has recently emerged as a potential biomarker for inflammatory skin diseases, such as atopic dermatitis (AD). This assessment method involves quantifying circular nano-size objects (CNOs) in corneocyte nanotexture images, enabling noninvasive analysis via stratum corneum (SC) tape stripping. Current approaches for identifying CNOs rely on computer vision techniques with specific geometric criteria, resulting in inaccuracies due to the susceptibility of nano-imaging techniques to environmental noise and structural occlusion on the corneocyte.

Results: This study recruited 45 AD patients and 15 healthy controls, evenly divided into 4 severity groups based on their Eczema Area and Severity Index scores. Subsequently, we collected a dataset of over 1,000 corneocyte nanotexture images using our in-house high-speed dermal atomic force microscope. This dataset was utilized to train state-of-the-art deep learning object detectors for identifying CNOs. Additionally, we implemented a kernel density estimator to analyze the spatial distribution of CNOs, excluding ineffective regions with minimal CNO occurrence, such as ridges and occlusions, thereby enhancing accuracy in density calculations. After fine-tuning, our detection model achieved an overall accuracy of 91.4% in detecting CNOs.

Conclusions: By integrating deep learning object detector with spatial analysis algorithms, we developed a precise methodology for calculating CNO density, termed the Effective Corneocyte Topographical Index (ECTI). The ECTI demonstrated exceptional robustness to nano-imaging artifacts and presents substantial potential for advancing AD diagnostics by effectively distinguishing between SC samples of varying AD severity and healthy controls.

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来源期刊
GigaScience
GigaScience MULTIDISCIPLINARY SCIENCES-
CiteScore
15.50
自引率
1.10%
发文量
119
审稿时长
1 weeks
期刊介绍: GigaScience seeks to transform data dissemination and utilization in the life and biomedical sciences. As an online open-access open-data journal, it specializes in publishing "big-data" studies encompassing various fields. Its scope includes not only "omic" type data and the fields of high-throughput biology currently serviced by large public repositories, but also the growing range of more difficult-to-access data, such as imaging, neuroscience, ecology, cohort data, systems biology and other new types of large-scale shareable data.
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