{"title":"从大朗石山(一个火山锥)分离的monticuli sp. nov.,以及2003年将Actinomadura glauciflava Lu等重新分类为luteofluorescens (Shinobu 1962)和Preobrazhenskaya等1975年(批准名录1980)的后异型同名。","authors":"Soon Dong Lee, Hong Lim Yang, In Seop Kim","doi":"10.1099/ijsem.0.006609","DOIUrl":null,"url":null,"abstract":"<p><p>Two mycelium-forming actinobacterial strains, designated as DLS-47 and DLS-62<sup>T</sup>, were isolated from volcanic ash collected from the surface of a rock on the peak of Darangshi Oreum (a volcanic cone) in Jeju, Republic of Korea, and their taxonomic positions were investigated by a polyphasic approach. Both of the isolates showed growth at 20-42 °C, pH 6.0-9.0 and 0-1% (w/v) NaCl. Furthermore, DLS-47 was found to grow at 45 °C, while strain DLS-62<sup>T</sup> grew at pH 10.0 and 3% (w/v) NaCl. The 16S rRNA gene-based phylogeny showed that both of the isolates belonged to the genus <i>Actinomadura</i>; strain DLS-47 was most closely related to <i>Actinomadura chokoriensis</i> DSM 45346<sup>T</sup> (100% sequence identity), while strain DLS-62<sup>T</sup> formed a tight cluster with <i>Actinomadura bangladeshensis</i> DSM 45347<sup>T</sup> (99.5% sequence similarity). Morphological and chemotaxonomic characteristics supported the affiliation of the two isolates to the genus <i>Actinomadura</i>. Phylogenomic analysis based on 92 core gene sequences showed that both of the isolates were most closely related to <i>A. chokoriensis</i> DSM 45346<sup>T</sup>. Strain DLS-47 shared 100% of orthologous average nucleotide identity and digital DNA-DNA hybridization values with <i>A. chokoriensis</i> DSM 45346<sup>T</sup>, while strain DLS-62<sup>T</sup> showed orthologous average nucleotide identity ≤89.8% and digital DNA-DNA hybridization values ≤39.4% with strain DLS-47 and members of the genus <i>Actinomadura</i>. The results of phenotypic assays and comparison of overall genomic relatedness indices support the conclusion that strain DLS-47 (= KACC 23347=DSM 116423) is a strain of <i>A. chokoriensis</i>, while strain DLS-62<sup>T</sup> (= KACC 23345<sup>T</sup> = DSM 116424<sup>T</sup>) represents a new species of the genus <i>Actinomadura</i>, for which the name <i>Actinomadura monticuli</i> sp. nov. is proposed. Also, <i>Actinomadura glauciflava</i> Lu <i>et al.</i> 2003 is reclassified as a later heterotypic synonym of <i>Actinomadura luteofluorescens</i> (Shinobu 1962) Preobrazhenskaya <i>et al</i>. 1975 (Approved Lists 1980) based on analysis of overall genomic relatedness indices and phenotypic similarity.</p>","PeriodicalId":14390,"journal":{"name":"International journal of systematic and evolutionary microbiology","volume":"74 12","pages":""},"PeriodicalIF":2.0000,"publicationDate":"2024-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"<i>Actinomadura monticuli</i> sp. nov., isolated from Darangshi Oreum (a volcanic cone), and the reclassification of <i>Actinomadura glauciflava</i> Lu <i>et al</i>. 2003 as a later heterotypic synonym of <i>Actinomadura luteofluorescens</i> (Shinobu 1962) Preobrazhenskaya <i>et al</i>. 1975 (Approved Lists 1980).\",\"authors\":\"Soon Dong Lee, Hong Lim Yang, In Seop Kim\",\"doi\":\"10.1099/ijsem.0.006609\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>Two mycelium-forming actinobacterial strains, designated as DLS-47 and DLS-62<sup>T</sup>, were isolated from volcanic ash collected from the surface of a rock on the peak of Darangshi Oreum (a volcanic cone) in Jeju, Republic of Korea, and their taxonomic positions were investigated by a polyphasic approach. Both of the isolates showed growth at 20-42 °C, pH 6.0-9.0 and 0-1% (w/v) NaCl. Furthermore, DLS-47 was found to grow at 45 °C, while strain DLS-62<sup>T</sup> grew at pH 10.0 and 3% (w/v) NaCl. The 16S rRNA gene-based phylogeny showed that both of the isolates belonged to the genus <i>Actinomadura</i>; strain DLS-47 was most closely related to <i>Actinomadura chokoriensis</i> DSM 45346<sup>T</sup> (100% sequence identity), while strain DLS-62<sup>T</sup> formed a tight cluster with <i>Actinomadura bangladeshensis</i> DSM 45347<sup>T</sup> (99.5% sequence similarity). Morphological and chemotaxonomic characteristics supported the affiliation of the two isolates to the genus <i>Actinomadura</i>. Phylogenomic analysis based on 92 core gene sequences showed that both of the isolates were most closely related to <i>A. chokoriensis</i> DSM 45346<sup>T</sup>. Strain DLS-47 shared 100% of orthologous average nucleotide identity and digital DNA-DNA hybridization values with <i>A. chokoriensis</i> DSM 45346<sup>T</sup>, while strain DLS-62<sup>T</sup> showed orthologous average nucleotide identity ≤89.8% and digital DNA-DNA hybridization values ≤39.4% with strain DLS-47 and members of the genus <i>Actinomadura</i>. The results of phenotypic assays and comparison of overall genomic relatedness indices support the conclusion that strain DLS-47 (= KACC 23347=DSM 116423) is a strain of <i>A. chokoriensis</i>, while strain DLS-62<sup>T</sup> (= KACC 23345<sup>T</sup> = DSM 116424<sup>T</sup>) represents a new species of the genus <i>Actinomadura</i>, for which the name <i>Actinomadura monticuli</i> sp. nov. is proposed. Also, <i>Actinomadura glauciflava</i> Lu <i>et al.</i> 2003 is reclassified as a later heterotypic synonym of <i>Actinomadura luteofluorescens</i> (Shinobu 1962) Preobrazhenskaya <i>et al</i>. 1975 (Approved Lists 1980) based on analysis of overall genomic relatedness indices and phenotypic similarity.</p>\",\"PeriodicalId\":14390,\"journal\":{\"name\":\"International journal of systematic and evolutionary microbiology\",\"volume\":\"74 12\",\"pages\":\"\"},\"PeriodicalIF\":2.0000,\"publicationDate\":\"2024-12-01\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"International journal of systematic and evolutionary microbiology\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://doi.org/10.1099/ijsem.0.006609\",\"RegionNum\":3,\"RegionCategory\":\"生物学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q4\",\"JCRName\":\"MICROBIOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"International journal of systematic and evolutionary microbiology","FirstCategoryId":"99","ListUrlMain":"https://doi.org/10.1099/ijsem.0.006609","RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q4","JCRName":"MICROBIOLOGY","Score":null,"Total":0}
Actinomadura monticuli sp. nov., isolated from Darangshi Oreum (a volcanic cone), and the reclassification of Actinomadura glauciflava Lu et al. 2003 as a later heterotypic synonym of Actinomadura luteofluorescens (Shinobu 1962) Preobrazhenskaya et al. 1975 (Approved Lists 1980).
Two mycelium-forming actinobacterial strains, designated as DLS-47 and DLS-62T, were isolated from volcanic ash collected from the surface of a rock on the peak of Darangshi Oreum (a volcanic cone) in Jeju, Republic of Korea, and their taxonomic positions were investigated by a polyphasic approach. Both of the isolates showed growth at 20-42 °C, pH 6.0-9.0 and 0-1% (w/v) NaCl. Furthermore, DLS-47 was found to grow at 45 °C, while strain DLS-62T grew at pH 10.0 and 3% (w/v) NaCl. The 16S rRNA gene-based phylogeny showed that both of the isolates belonged to the genus Actinomadura; strain DLS-47 was most closely related to Actinomadura chokoriensis DSM 45346T (100% sequence identity), while strain DLS-62T formed a tight cluster with Actinomadura bangladeshensis DSM 45347T (99.5% sequence similarity). Morphological and chemotaxonomic characteristics supported the affiliation of the two isolates to the genus Actinomadura. Phylogenomic analysis based on 92 core gene sequences showed that both of the isolates were most closely related to A. chokoriensis DSM 45346T. Strain DLS-47 shared 100% of orthologous average nucleotide identity and digital DNA-DNA hybridization values with A. chokoriensis DSM 45346T, while strain DLS-62T showed orthologous average nucleotide identity ≤89.8% and digital DNA-DNA hybridization values ≤39.4% with strain DLS-47 and members of the genus Actinomadura. The results of phenotypic assays and comparison of overall genomic relatedness indices support the conclusion that strain DLS-47 (= KACC 23347=DSM 116423) is a strain of A. chokoriensis, while strain DLS-62T (= KACC 23345T = DSM 116424T) represents a new species of the genus Actinomadura, for which the name Actinomadura monticuli sp. nov. is proposed. Also, Actinomadura glauciflava Lu et al. 2003 is reclassified as a later heterotypic synonym of Actinomadura luteofluorescens (Shinobu 1962) Preobrazhenskaya et al. 1975 (Approved Lists 1980) based on analysis of overall genomic relatedness indices and phenotypic similarity.
期刊介绍:
Published by the Microbiology Society and owned by the International Committee on Systematics of Prokaryotes (ICSP), a committee of the Bacteriology and Applied Microbiology Division of the International Union of Microbiological Societies, International Journal of Systematic and Evolutionary Microbiology is the leading forum for the publication of novel microbial taxa and the ICSP’s official journal of record for prokaryotic names.
The journal welcomes high-quality research on all aspects of microbial evolution, phylogenetics and systematics, encouraging submissions on all prokaryotes, yeasts, microfungi, protozoa and microalgae across the full breadth of systematics including:
Identification, characterisation and culture preservation
Microbial evolution and biodiversity
Molecular environmental work with strong taxonomic or evolutionary content
Nomenclature
Taxonomy and phylogenetics.