从大朗石山(一个火山锥)分离的monticuli sp. nov.,以及2003年将Actinomadura glauciflava Lu等重新分类为luteofluorescens (Shinobu 1962)和Preobrazhenskaya等1975年(批准名录1980)的后异型同名。

IF 2 3区 生物学 Q4 MICROBIOLOGY International journal of systematic and evolutionary microbiology Pub Date : 2024-12-01 DOI:10.1099/ijsem.0.006609
Soon Dong Lee, Hong Lim Yang, In Seop Kim
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引用次数: 0

摘要

从韩国济州大朗石峰火山表面的火山灰中分离到两株成菌丝的放线菌,分别命名为DLS-47和DLS-62T,并采用多相法对其分类位置进行了研究。两株菌株在20 ~ 42℃、pH 6.0 ~ 9.0和0 ~ 1% (w/v) NaCl条件下均能生长。此外,菌株dl -47在45°C下生长,而菌株dl - 62t在pH 10.0和3% (w/v) NaCl下生长。基于16S rRNA基因的系统发育表明,两株分离株均属于放线菌属;菌株DLS-47与chokoriensis DSM 45346T亲缘关系最密切(序列同源性为100%),菌株DLS-62T与孟加拉国放线瘤鼠DSM 45347T亲缘关系紧密(序列同源性为99.5%)。形态和化学分类特征支持这两个分离株属于放线菌属。基于92个核心基因序列的系统基因组分析表明,这两株分离株与库氏蜱DSM 45346T亲缘关系最为密切。菌株DLS-47与库氏蜱DSM 45346T同源平均核苷酸同源性和数字DNA-DNA杂交值100%,菌株DLS-62T与菌株DLS-47和放线瘤属成员同源平均核苷酸同源性≤89.8%,数字DNA-DNA杂交值≤39.4%。表型分析和整体基因组亲缘性指标的比较结果支持菌株DLS-47 (= KACC 23347=DSM 116423)为库氏a.s okoriensis的一株,菌株DLS-62T (= KACC 23345T =DSM 116424T)为放线瘤属(Actinomadura monticuli sp. nov.)的新种,并将其命名为放线瘤属。此外,根据总体基因组相关性指数和表型相似性分析,将glauciflava Actinomadura Lu et al. 2003重新归类为luteofluorescens (Shinobu 1962)和Preobrazhenskaya et al. 1975 (Approved Lists 1980)的后异型同义词。
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Actinomadura monticuli sp. nov., isolated from Darangshi Oreum (a volcanic cone), and the reclassification of Actinomadura glauciflava Lu et al. 2003 as a later heterotypic synonym of Actinomadura luteofluorescens (Shinobu 1962) Preobrazhenskaya et al. 1975 (Approved Lists 1980).

Two mycelium-forming actinobacterial strains, designated as DLS-47 and DLS-62T, were isolated from volcanic ash collected from the surface of a rock on the peak of Darangshi Oreum (a volcanic cone) in Jeju, Republic of Korea, and their taxonomic positions were investigated by a polyphasic approach. Both of the isolates showed growth at 20-42 °C, pH 6.0-9.0 and 0-1% (w/v) NaCl. Furthermore, DLS-47 was found to grow at 45 °C, while strain DLS-62T grew at pH 10.0 and 3% (w/v) NaCl. The 16S rRNA gene-based phylogeny showed that both of the isolates belonged to the genus Actinomadura; strain DLS-47 was most closely related to Actinomadura chokoriensis DSM 45346T (100% sequence identity), while strain DLS-62T formed a tight cluster with Actinomadura bangladeshensis DSM 45347T (99.5% sequence similarity). Morphological and chemotaxonomic characteristics supported the affiliation of the two isolates to the genus Actinomadura. Phylogenomic analysis based on 92 core gene sequences showed that both of the isolates were most closely related to A. chokoriensis DSM 45346T. Strain DLS-47 shared 100% of orthologous average nucleotide identity and digital DNA-DNA hybridization values with A. chokoriensis DSM 45346T, while strain DLS-62T showed orthologous average nucleotide identity ≤89.8% and digital DNA-DNA hybridization values ≤39.4% with strain DLS-47 and members of the genus Actinomadura. The results of phenotypic assays and comparison of overall genomic relatedness indices support the conclusion that strain DLS-47 (= KACC 23347=DSM 116423) is a strain of A. chokoriensis, while strain DLS-62T (= KACC 23345T = DSM 116424T) represents a new species of the genus Actinomadura, for which the name Actinomadura monticuli sp. nov. is proposed. Also, Actinomadura glauciflava Lu et al. 2003 is reclassified as a later heterotypic synonym of Actinomadura luteofluorescens (Shinobu 1962) Preobrazhenskaya et al. 1975 (Approved Lists 1980) based on analysis of overall genomic relatedness indices and phenotypic similarity.

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来源期刊
CiteScore
5.20
自引率
21.40%
发文量
426
审稿时长
1 months
期刊介绍: Published by the Microbiology Society and owned by the International Committee on Systematics of Prokaryotes (ICSP), a committee of the Bacteriology and Applied Microbiology Division of the International Union of Microbiological Societies, International Journal of Systematic and Evolutionary Microbiology is the leading forum for the publication of novel microbial taxa and the ICSP’s official journal of record for prokaryotic names. The journal welcomes high-quality research on all aspects of microbial evolution, phylogenetics and systematics, encouraging submissions on all prokaryotes, yeasts, microfungi, protozoa and microalgae across the full breadth of systematics including: Identification, characterisation and culture preservation Microbial evolution and biodiversity Molecular environmental work with strong taxonomic or evolutionary content Nomenclature Taxonomy and phylogenetics.
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