基于 TMT 的大鼠辐射肺损伤蛋白质组学分析

IF 2.8 3区 医学 Q2 BIOCHEMICAL RESEARCH METHODS Clinical proteomics Pub Date : 2024-12-19 DOI:10.1186/s12014-024-09518-0
Jing Liu, Kuanke Gao, Xue Ren, Tong Wu, Haibo Zhang, Defu Yang, Hengjiao Wang, Ying Xu, Ying Yan
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引用次数: 0

摘要

放射诱导肺损伤(RILI)是放射治疗常见的不良反应,对治疗进展和患者的生活质量产生负面影响。确定RILI的生物标志物可为临床预防和治疗RILI提供参考。本研究为探索与RILI相关的关键蛋白,构建RILI大鼠模型,采用串联质谱标记和定量蛋白质组学技术对RILI组织和正常肺组织进行分析。我们使用京都基因与基因组百科全书(KEGG)途径富集、基因本体(GO)富集和蛋白-蛋白相互作用(PPI)网络对差异表达蛋白(DEPs)进行生物信息学分析。结果发现,与对照组相比,RILI组肺组织中有185种差异表达蛋白,包括110种上调蛋白和75种下调蛋白。氧化石墨烯分析表明,差异表达蛋白涉及氧化还原过程、细胞生物合成过程和细胞外基质。KEGG结果显示,差异表达蛋白主要参与PI3K-Akt、ECM受体相互作用、花生四烯酸代谢、谷胱甘肽代谢等途径。这些差异表达蛋白的功能和信号通路的研究结果为进一步研究RILI的机制提供了理论基础。
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TMT-based proteomic analysis of radiation lung injury in rats.

Radiation-induced lung injury (RILI) is a common adverse effect of radiation therapy that negatively affects treatment progression and the quality of life of patients. Identifying biomarkers for RILI can provide reference for the prevention and treatment of RILI in clinical practice. In this study, to explore key proteins related to RILI, we constructed a rat model of RILI and analyzed RILI tissues and normal lung tissues using tandem mass spectrometry labeling and quantitative proteomics technology. We used Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment, Gene Ontology (GO) enrichment and protein-protein interaction (PPI) networks for bioinformatics analysis of Differentially expressed proteins (DEPs). The results identified 185 differentially expressed proteins in lung tissue from the RILI group compared with the controls, including 110 up-regulated proteins and 75 down-regulated proteins. GO analysis showed that the differentially expressed proteins were involved oxidation-reduction process, cellular biosynthetic processes and extracellular matrix. KEGG results demonstrated that the differentially expressed proteins were mainly involved in the PI3K-Akt, ECM receptor interactions, arachidonic acid metabolism, glutathione metabolism and other pathways. These results on the functions and signaling pathways of the differentially expressed proteins provide a theoretical basis for further study of the mechanism of RILI.

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来源期刊
Clinical proteomics
Clinical proteomics BIOCHEMICAL RESEARCH METHODS-
CiteScore
5.80
自引率
2.60%
发文量
37
审稿时长
17 weeks
期刊介绍: Clinical Proteomics encompasses all aspects of translational proteomics. Special emphasis will be placed on the application of proteomic technology to all aspects of clinical research and molecular medicine. The journal is committed to rapid scientific review and timely publication of submitted manuscripts.
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