利用机器学习改进核磁共振时间序列的硬建模。

IF 2 3区 化学 Q3 BIOCHEMICAL RESEARCH METHODS Journal of magnetic resonance Pub Date : 2025-01-01 DOI:10.1016/j.jmr.2024.107813
Jan Hellwig , Tobias Strauß , Erik von Harbou , Klaus Neymeyr
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引用次数: 0

摘要

建立核磁共振谱的时间序列模型是一种有效的方法,可以准确地从复杂的过程(如反应)中提取时间浓度分布等信息。使用非线性优化对这些时间序列进行建模通常会遇到高运行时间的问题。另一方面,使用深度学习可以快速解决建模问题,特别是对于具有分离峰的单光谱。然而,当峰值重叠或交叉时,精度显著降低。我们提出了一种混合方法,结合了两种方法的优点,同时减轻了它们的缺点。这种混合方法改进了先前的工作(Meinhardt et al., 2022),并使用神经网络预测优化算法的初始参数,之后只需对参数进行微调。我们提出了构建和实验数据集的结果,并在运行时间和准确性方面取得了改进。
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Using machine learning to improve the hard modeling of NMR time series
Modeling time series of NMR spectra is a useful method to accurately extract information such as temporal concentration profiles from complex processes, e.g. reactions. Modeling these time series by using nonlinear optimization often suffers from high runtimes. On the other hand, using deep learning solves the modeling problem quickly, especially for single spectra with separated peaks. However, the accuracy decreases significantly when peaks overlap or cross. We propose a hybrid approach combining the strengths of both methods while mitigating their drawbacks. This hybrid methods improves on a previous work (Meinhardt et al., 2022) and employs neural networks to predict initial parameters for the optimization algorithm, which only needs to fine-tune the parameters afterwards. We present results for both constructed and experimental data sets and achieve improvements in both runtime and accuracy.
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来源期刊
CiteScore
3.80
自引率
13.60%
发文量
150
审稿时长
69 days
期刊介绍: The Journal of Magnetic Resonance presents original technical and scientific papers in all aspects of magnetic resonance, including nuclear magnetic resonance spectroscopy (NMR) of solids and liquids, electron spin/paramagnetic resonance (EPR), in vivo magnetic resonance imaging (MRI) and spectroscopy (MRS), nuclear quadrupole resonance (NQR) and magnetic resonance phenomena at nearly zero fields or in combination with optics. The Journal''s main aims include deepening the physical principles underlying all these spectroscopies, publishing significant theoretical and experimental results leading to spectral and spatial progress in these areas, and opening new MR-based applications in chemistry, biology and medicine. The Journal also seeks descriptions of novel apparatuses, new experimental protocols, and new procedures of data analysis and interpretation - including computational and quantum-mechanical methods - capable of advancing MR spectroscopy and imaging.
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