SSSort 2.0:用于单感觉记录的半自动尖峰检测和分类系统。

IF 2.7 4区 医学 Q2 BIOCHEMICAL RESEARCH METHODS Journal of Neuroscience Methods Pub Date : 2024-12-19 DOI:10.1016/j.jneumeth.2024.110351
Lydia Ellison , Georg Raiser , Alicia Garrido-Peña , György Kemenes , Thomas Nowotny
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引用次数: 0

摘要

背景:单感觉记录是一种有价值的感官研究工具,其本质是获取细胞外信号,通常反映几个共同居住的感觉神经元的联合活动。然而,由于放电速率依赖于spike形状的变化以及来自多个神经元的共同发生的spike的重叠,通过spike分类分离单个神经元的贡献仍然是一个主要挑战。到目前为止,这些挑战使得研究更复杂、混合气味刺激的反应几乎是不可能的。新方法:在这里,我们提出了SSSort 2.0,一种通过自动化和半自动信号处理解决这两个问题的方法和软件。我们还开发了一种基于生成替代地真值数据的更客观地验证尖峰排序方法的方法,我们已经在用户研究中测试了我们软件的实际有效性。结果:我们发现SSSort 2.0通常匹配或超过专家手动尖峰排序的性能。我们进一步证明,对于新手来说,在大多数情况下,SSSort 2.0的准确率要好得多。结论:总的来说,我们已经证明,SSSort 2.0软件的尖峰排序可以使SSRs的数据处理自动化,其精度水平与专家手动性能相当或更高。
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SSSort 2.0: A semi-automated spike detection and sorting system for single sensillum recordings

Background:

Single-sensillum recordings are a valuable tool for sensory research which, by their nature, access extra-cellular signals typically reflecting the combined activity of several co-housed sensory neurons. However, isolating the contribution of an individual neuron through spike-sorting has remained a major challenge due to firing rate-dependent changes in spike shape and the overlap of co-occurring spikes from several neurons. These challenges have so far made it close to impossible to investigate the responses to more complex, mixed odour stimuli.

New Method:

Here we present SSSort 2.0, a method and software addressing both problems through automated and semi-automated signal processing. We have also developed a method for more objective validation of spike sorting methods based on generating surrogate ground truth data and we have tested the practical effectiveness of our software in a user study.

Results:

We find that SSSort 2.0 typically matches or exceeds the performance of expert manual spike sorting. We further demonstrate that, for novices, accuracy is much better with SSSort 2.0 under most conditions.

Conclusion:

Overall, we have demonstrated that spike-sorting with SSSort 2.0 software can automate data processing of SSRs with accuracy levels comparable to, or above, expert manual performance.
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来源期刊
Journal of Neuroscience Methods
Journal of Neuroscience Methods 医学-神经科学
CiteScore
7.10
自引率
3.30%
发文量
226
审稿时长
52 days
期刊介绍: The Journal of Neuroscience Methods publishes papers that describe new methods that are specifically for neuroscience research conducted in invertebrates, vertebrates or in man. Major methodological improvements or important refinements of established neuroscience methods are also considered for publication. The Journal''s Scope includes all aspects of contemporary neuroscience research, including anatomical, behavioural, biochemical, cellular, computational, molecular, invasive and non-invasive imaging, optogenetic, and physiological research investigations.
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