AneRBC数据集:使用红细胞图像进行计算机辅助贫血诊断的基准数据集。

IF 3.4 4区 生物学 Q1 MATHEMATICAL & COMPUTATIONAL BIOLOGY Database: The Journal of Biological Databases and Curation Pub Date : 2024-12-25 DOI:10.1093/database/baae120
Muhammad Shahzad, Syed Hamad Shirazi, Muhammad Yaqoob, Zakir Khan, Assad Rasheed, Israr Ahmed Sheikh, Asad Hayat, Huiyu Zhou
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引用次数: 0

摘要

利用医学图像分析技术对外周血涂片进行视觉分析,诊断贫血引起的红细胞形态畸形。缺乏完整的贫血红细胞数据集阻碍了深度卷积神经网络(cnn)用于红细胞形态计算机辅助分析的训练和测试。为了克服这个问题,我们引入了一个名为贫血红细胞(AneRBC)的基准RBC图像数据集。该数据集分为两个版本:AneRBC-I和AneRBC-II。AneRBC-I包含1000张显微图像,包括500张健康和500张贫血图像,分辨率为1224 × 960像素,以及手动生成的每张图像的地面真值。每张图像包含大约1550个RBC元素,包括正常细胞、微细胞、巨细胞、椭圆细胞和靶细胞,总共大约有1550000个RBC元素。该数据集还包括每个图像的完整血细胞计数和形态学报告,以验证CNN模型结果与临床数据。在一组专家病理学家的监督下,生成每个图像的注释、标记和基础真值。由于分辨率高,每张图像被划分为12个具有ground truth的子图像,合并到AneRBC-II中。AneRBC-II共包含12000张图像,包括6000张原始红细胞图像和6000张贫血红细胞图像。应用四种最先进的CNN模型进行分割和分类,以验证所提出的数据集。数据库地址:https://data.mendeley.com/preview/hms3sjzt7f?a=4d0ba42a-cc6f-4777-adc4-2552e80db22b。
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AneRBC dataset: a benchmark dataset for computer-aided anemia diagnosis using RBC images.

Visual analysis of peripheral blood smear slides using medical image analysis is required to diagnose red blood cell (RBC) morphological deformities caused by anemia. The absence of a complete anaemic RBC dataset has hindered the training and testing of deep convolutional neural networks (CNNs) for computer-aided analysis of RBC morphology. We introduce a benchmark RBC image dataset named Anemic RBC (AneRBC) to overcome this problem. This dataset is divided into two versions: AneRBC-I and AneRBC-II. AneRBC-I contains 1000 microscopic images, including 500 healthy and 500 anaemic images with 1224 × 960 pixel resolution, along with manually generated ground truth of each image. Each image contains approximately 1550 RBC elements, including normocytes, microcytes, macrocytes, elliptocytes, and target cells, resulting in a total of approximately 1 550 000 RBC elements. The dataset also includes each image's complete blood count and morphology reports to validate the CNN model results with clinical data. Under the supervision of a team of expert pathologists, the annotation, labeling, and ground truth for each image were generated. Due to the high resolution, each image was divided into 12 subimages with ground truth and incorporated into AneRBC-II. AneRBC-II comprises a total of 12 000 images, comprising 6000 original and 6000 anaemic RBC images. Four state-of-the-art CNN models were applied for segmentation and classification to validate the proposed dataset. Database URL: https://data.mendeley.com/preview/hms3sjzt7f?a=4d0ba42a-cc6f-4777-adc4-2552e80db22b.

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来源期刊
Database: The Journal of Biological Databases and Curation
Database: The Journal of Biological Databases and Curation MATHEMATICAL & COMPUTATIONAL BIOLOGY-
CiteScore
9.00
自引率
3.40%
发文量
100
审稿时长
>12 weeks
期刊介绍: Huge volumes of primary data are archived in numerous open-access databases, and with new generation technologies becoming more common in laboratories, large datasets will become even more prevalent. The archiving, curation, analysis and interpretation of all of these data are a challenge. Database development and biocuration are at the forefront of the endeavor to make sense of this mounting deluge of data. Database: The Journal of Biological Databases and Curation provides an open access platform for the presentation of novel ideas in database research and biocuration, and aims to help strengthen the bridge between database developers, curators, and users.
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