一个在FAIR数据网络中生成和共享元数据的生态系统。

IF 11.8 2区 生物学 Q1 MULTIDISCIPLINARY SCIENCES GigaScience Pub Date : 2025-01-06 DOI:10.1093/gigascience/giae111
Daniel Jacob, François Ehrenmann, Romain David, Joseph Tran, Cathleen Mirande-Ney, Philippe Chaumeil
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引用次数: 0

摘要

背景:描述性元数据对于报告、发现、利用和动员研究数据集至关重要。然而,将元数据问题作为数据管理计划的一部分来解决,对于数据生产者来说可能会很复杂。为了组织和记录数据,必须创建各种描述性元数据。此外,在共享数据时,重要的是确保元数据的互操作性符合FAIR(可查找、可访问、可互操作、可重用)原则。考虑到这些挑战的实际性质,需要能够有效地帮助数据管理人员的管理工具。此外,这些工具应满足数据生产者的需要,便于使用,只需要很少的培训。结果:我们开发了Maggot (Metadata Aggregation on Data Storage),这是一个基于web的工具,可以使用高级元数据在本地管理数据目录。主要目标是方便数据传播和存储在数据存储库中。使用Maggot,用户可以轻松地生成高级元数据并将其附加到数据集,从而在协作环境中实现无缝共享。这种方法与许多数据管理计划相一致,因为它有效地解决了与数据组织、文档、存储和元数据共享相关的挑战,这些挑战基于协作组内部和外部的FAIR原则。此外,Maggot支持元数据交叉(即,生成的元数据可以转换为特定数据存储库使用的模式,或者使用适合第三方应用程序收集数据的格式导出)。结论:Maggot的主要目的是使用精心选择的模式和标准来简化高级元数据的收集。此外,它简化了通过元数据的数据可访问性,这通常是公共资助项目的需求。因此,可以利用Maggot促进有效的本地管理,以促进数据共享,同时遵守公平原则。此外,它还有助于在欧洲开放科学云框架内准备未来的EOSC FAIR数据网络。
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An ecosystem for producing and sharing metadata within the web of FAIR Data.

Background: Descriptive metadata are vital for reporting, discovering, leveraging, and mobilizing research datasets. However, resolving metadata issues as part of a data management plan can be complex for data producers. To organize and document data, various descriptive metadata must be created. Furthermore, when sharing data, it is important to ensure metadata interoperability in line with FAIR (Findable, Accessible, Interoperable, Reusable) principles. Given the practical nature of these challenges, there is a need for management tools that can assist data managers effectively. Additionally, these tools should meet the needs of data producers and be user-friendly, requiring minimal training.

Results: We developed Maggot (Metadata Aggregation on Data Storage), a web-based tool to locally manage a data catalog using high-level metadata. The main goal was to facilitate easy data dissemination and deposition in data repositories. With Maggot, users can easily generate and attach high-level metadata to datasets, allowing for seamless sharing in a collaborative environment. This approach aligns with many data management plans as it effectively addresses challenges related to data organization, documentation, storage, and the sharing of metadata based on FAIR principles within and beyond the collaborative group. Furthermore, Maggot enables metadata crosswalks (i.e., generated metadata can be converted to the schema used by a specific data repository or be exported using a format suitable for data collection by third-party applications).

Conclusion: The primary purpose of Maggot is to streamline the collection of high-level metadata using carefully chosen schemas and standards. Additionally, it simplifies data accessibility via metadata, typically a requirement for publicly funded projects. As a result, Maggot can be utilized to promote effective local management with the goal of facilitating data sharing while adhering to the FAIR principles. Furthermore, it can contribute to the preparation of the future EOSC FAIR Web of Data within the European Open Science Cloud framework.

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来源期刊
GigaScience
GigaScience MULTIDISCIPLINARY SCIENCES-
CiteScore
15.50
自引率
1.10%
发文量
119
审稿时长
1 weeks
期刊介绍: GigaScience seeks to transform data dissemination and utilization in the life and biomedical sciences. As an online open-access open-data journal, it specializes in publishing "big-data" studies encompassing various fields. Its scope includes not only "omic" type data and the fields of high-throughput biology currently serviced by large public repositories, but also the growing range of more difficult-to-access data, such as imaging, neuroscience, ecology, cohort data, systems biology and other new types of large-scale shareable data.
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