用静电嵌入ML电位改进环境和振动效应的描述

IF 4.8 2区 化学 Q2 CHEMISTRY, PHYSICAL The Journal of Physical Chemistry Letters Pub Date : 2025-01-13 DOI:10.1021/acs.jpclett.4c02949
Kirill Zinovjev, Carles Curutchet
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引用次数: 0

摘要

在光谱和激发态动力学的模拟中,通常通过将分子动力学与激发态计算相结合来结合环境和振动效应,从而可以估计描述频率相关的系统池耦合强度的光谱密度。然而,由于需要有效的采样,通常导致采用经典力场,尽管众所周知,由于与激发态方法不匹配而导致不准确。在这里,我们提出了一种多尺度策略,通过将基于静电嵌入ML电位的EMLE模拟与QM/MMPol极化嵌入模型相结合,来计算3-甲基吲哚(色氨酸的显色部分,介导多种重要的生物功能)在气相、水溶液和人血清白蛋白中的激发态和光谱密度,从而克服了这一限制。我们的方案提供了高度精确的结果,忠实地再现了从头计算QM/MM对应的结果,从而为准确研究生物运动的时间尺度与色氨酸和其他生物系统的光物理之间的相互关系铺平了道路。
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Improved Description of Environment and Vibronic Effects with Electrostatically Embedded ML Potentials
Incorporation of environment and vibronic effects in simulations of optical spectra and excited state dynamics is commonly done by combining molecular dynamics with excited state calculations, which allows to estimate the spectral density describing the frequency-dependent system-bath coupling strength. The need for efficient sampling, however, usually leads to the adoption of classical force fields despite well-known inaccuracies due to the mismatch with the excited state method. Here, we present a multiscale strategy that overcomes this limitation by combining EMLE simulations based on electrostatically embedded ML potentials with the QM/MMPol polarizable embedding model to compute the excited states and spectral density of 3-methyl-indole, the chromophoric moiety of tryptophan that mediates a variety of important biological functions, in the gas phase, in water solution, and in the human serum albumin protein. Our protocol provides highly accurate results that faithfully reproduce their ab initio QM/MM counterparts, thus paving the way for accurate investigations on the interrelation between the time scales of biological motion and the photophysics of tryptophan and other biosystems.
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来源期刊
The Journal of Physical Chemistry Letters
The Journal of Physical Chemistry Letters CHEMISTRY, PHYSICAL-NANOSCIENCE & NANOTECHNOLOGY
CiteScore
9.60
自引率
7.00%
发文量
1519
审稿时长
1.6 months
期刊介绍: The Journal of Physical Chemistry (JPC) Letters is devoted to reporting new and original experimental and theoretical basic research of interest to physical chemists, biophysical chemists, chemical physicists, physicists, material scientists, and engineers. An important criterion for acceptance is that the paper reports a significant scientific advance and/or physical insight such that rapid publication is essential. Two issues of JPC Letters are published each month.
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