酶的环工程,以控制其固定化和最终制造更有效的多相生物催化剂。

IF 4.5 3区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Protein Science Pub Date : 2025-02-01 DOI:10.1002/pro.70040
Nicoll Zeballos, Irene Ginés-Alcober, Javier Macías-León, Daniel Andrés-Sanz, Andrés Manuel González-Ramírez, Mercedes Sánchez-Costa, Pedro Merino, Ramón Hurtado-Guerrero, Fernando López-Gallego
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引用次数: 0

摘要

在各种工业应用中,酶固定化是提高酶性能必不可少的手段。通常,酶需要特定的空间安排以获得最佳功能,这强调了正确定向的重要性。尽管众所周知的N端或c端裁剪技术,实现方向控制的替代方案是有限的。在这里,我们提出了一种新颖的方法,用工程的富含his的环来剪裁酶表面。为此,我们首先解析了来自嗜热热菌HB27 (TtHBDH) (PDB: 9FBD)的六聚醇脱氢酶的x射线晶体结构。在这种三维结构的指导下,我们在酶表面设计了一个富含六个His残基的新环来控制酶的取向。分子动力学模拟表明,工程环的咪唑环比天然His残基具有更大的溶剂接近性,允许在某些金属螯合功能化载体上更有效地固定酶。使用铁(III)-儿茶酚功能化载体,固定化环变异体的表观Vmax是固定化his标记的变异体的两倍,反之亦然,当两个变异体都固定化在铜(II)-咪胺二乙酸功能化载体上。his标记的和环工程的TtHBDH在10个反应周期后表现出很高的操作稳定性,达到100%的生物转化率,但环变体比his标记的更快。
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Loop engineering of enzymes to control their immobilization and ultimately fabricate more efficient heterogeneous biocatalysts.

Enzyme immobilization is indispensable for enhancing enzyme performance in various industrial applications. Typically, enzymes require specific spatial arrangements for optimal functionality, underscoring the importance of correct orientation. Despite well-known N- or C-terminus tailoring techniques, alternatives for achieving orientation control are limited. Here, we propose a novel approach that tailors the enzyme surface with engineered His-rich loops. To that aim, we first solve the X-ray crystal structure of a hexameric alcohol dehydrogenase from Thermus thermophilus HB27 (TtHBDH) (PDB: 9FBD). Guided by this 3D structure, we engineer the enzyme surface with a new loop enriched with six His residues to control enzyme orientation. Molecular dynamics simulations reveal that the engineered loop's imidazole rings have greater solvent accessibility than those in native His residues, allowing for more efficient enzyme immobilization on certain metal chelate-functionalized carriers. Using carriers functionalized with iron (III)-catechol, the apparent Vmax of the immobilized loop variant doubles the immobilized His-tagged one, and vice versa when both variants are immobilized on carriers functionalized with copper (II)-imidodiacetic acid. His-tagged and loop-engineered TtHBDH show high operational stability reaching 100% bioconversion after 10 reaction cycles, yet the loop variant is faster than the His-tagged one.

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来源期刊
Protein Science
Protein Science 生物-生化与分子生物学
CiteScore
12.40
自引率
1.20%
发文量
246
审稿时长
1 months
期刊介绍: Protein Science, the flagship journal of The Protein Society, is a publication that focuses on advancing fundamental knowledge in the field of protein molecules. The journal welcomes original reports and review articles that contribute to our understanding of protein function, structure, folding, design, and evolution. Additionally, Protein Science encourages papers that explore the applications of protein science in various areas such as therapeutics, protein-based biomaterials, bionanotechnology, synthetic biology, and bioelectronics. The journal accepts manuscript submissions in any suitable format for review, with the requirement of converting the manuscript to journal-style format only upon acceptance for publication. Protein Science is indexed and abstracted in numerous databases, including the Agricultural & Environmental Science Database (ProQuest), Biological Science Database (ProQuest), CAS: Chemical Abstracts Service (ACS), Embase (Elsevier), Health & Medical Collection (ProQuest), Health Research Premium Collection (ProQuest), Materials Science & Engineering Database (ProQuest), MEDLINE/PubMed (NLM), Natural Science Collection (ProQuest), and SciTech Premium Collection (ProQuest).
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