Kamel Guedri , Rahat Zarin , Mowffaq Oreijah , Samaher Khalaf Alharbi , Hamiden Abd El-Wahed Khalifa
{"title":"具有延迟和致残结果的埃博拉传播动力学的人工神经网络驱动建模。","authors":"Kamel Guedri , Rahat Zarin , Mowffaq Oreijah , Samaher Khalaf Alharbi , Hamiden Abd El-Wahed Khalifa","doi":"10.1016/j.compbiolchem.2025.108350","DOIUrl":null,"url":null,"abstract":"<div><div>This study develops an Artificial Neural Network (ANN)-based framework to model the transmission dynamics and long-term disability outcomes of Ebola Virus Disease (EVD). Building on existing deterministic SEIR models, we extend the framework by introducing a disability compartment, capturing the progression of Ebola survivors to chronic health complications, such as post-Ebola syndrome. The proposed model stratifies the population into various epidemiological states, incorporating delays to better reflect the natural progression and intervention strategies associated with EVD. Fundamental properties of the model, such as positivity, boundedness, and stability, have been thoroughly examined. By leveraging the Levenberg–Marquardt backpropagation (LMB) algorithm, the ANN is trained on data generated through the Runge–Kutta method to solve a system of delay differential equations (DDEs) representing disease progression. This approach offers an alternative to conventional numerical solvers, addressing limitations such as computational overhead and approximation errors. The ANN model divides the dataset into 85% training, 10% validation, and 5% testing, ensuring reliable predictions with minimal absolute error. Comparative analysis against traditional methods highlights the advantages of the ANN-based solver in handling complex, delay-integrated systems. Our results underscore the utility of integrating ANN approaches in epidemic modeling, providing insights into both short- and long-term dynamics of Ebola outbreaks. By capturing disability outcomes, this work offers a robust framework for planning healthcare interventions and optimizing resource allocation for survivor rehabilitation. The findings contribute to the development of more comprehensive models for understanding and managing infectious diseases with long-term impacts.</div></div>","PeriodicalId":10616,"journal":{"name":"Computational Biology and Chemistry","volume":"115 ","pages":"Article 108350"},"PeriodicalIF":2.6000,"publicationDate":"2025-01-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Artificial neural network-driven modeling of Ebola transmission dynamics with delays and disability outcomes\",\"authors\":\"Kamel Guedri , Rahat Zarin , Mowffaq Oreijah , Samaher Khalaf Alharbi , Hamiden Abd El-Wahed Khalifa\",\"doi\":\"10.1016/j.compbiolchem.2025.108350\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><div>This study develops an Artificial Neural Network (ANN)-based framework to model the transmission dynamics and long-term disability outcomes of Ebola Virus Disease (EVD). Building on existing deterministic SEIR models, we extend the framework by introducing a disability compartment, capturing the progression of Ebola survivors to chronic health complications, such as post-Ebola syndrome. The proposed model stratifies the population into various epidemiological states, incorporating delays to better reflect the natural progression and intervention strategies associated with EVD. Fundamental properties of the model, such as positivity, boundedness, and stability, have been thoroughly examined. By leveraging the Levenberg–Marquardt backpropagation (LMB) algorithm, the ANN is trained on data generated through the Runge–Kutta method to solve a system of delay differential equations (DDEs) representing disease progression. This approach offers an alternative to conventional numerical solvers, addressing limitations such as computational overhead and approximation errors. The ANN model divides the dataset into 85% training, 10% validation, and 5% testing, ensuring reliable predictions with minimal absolute error. Comparative analysis against traditional methods highlights the advantages of the ANN-based solver in handling complex, delay-integrated systems. Our results underscore the utility of integrating ANN approaches in epidemic modeling, providing insights into both short- and long-term dynamics of Ebola outbreaks. By capturing disability outcomes, this work offers a robust framework for planning healthcare interventions and optimizing resource allocation for survivor rehabilitation. The findings contribute to the development of more comprehensive models for understanding and managing infectious diseases with long-term impacts.</div></div>\",\"PeriodicalId\":10616,\"journal\":{\"name\":\"Computational Biology and Chemistry\",\"volume\":\"115 \",\"pages\":\"Article 108350\"},\"PeriodicalIF\":2.6000,\"publicationDate\":\"2025-01-13\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Computational Biology and Chemistry\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://www.sciencedirect.com/science/article/pii/S1476927125000106\",\"RegionNum\":4,\"RegionCategory\":\"生物学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q2\",\"JCRName\":\"BIOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Computational Biology and Chemistry","FirstCategoryId":"99","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S1476927125000106","RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"BIOLOGY","Score":null,"Total":0}
Artificial neural network-driven modeling of Ebola transmission dynamics with delays and disability outcomes
This study develops an Artificial Neural Network (ANN)-based framework to model the transmission dynamics and long-term disability outcomes of Ebola Virus Disease (EVD). Building on existing deterministic SEIR models, we extend the framework by introducing a disability compartment, capturing the progression of Ebola survivors to chronic health complications, such as post-Ebola syndrome. The proposed model stratifies the population into various epidemiological states, incorporating delays to better reflect the natural progression and intervention strategies associated with EVD. Fundamental properties of the model, such as positivity, boundedness, and stability, have been thoroughly examined. By leveraging the Levenberg–Marquardt backpropagation (LMB) algorithm, the ANN is trained on data generated through the Runge–Kutta method to solve a system of delay differential equations (DDEs) representing disease progression. This approach offers an alternative to conventional numerical solvers, addressing limitations such as computational overhead and approximation errors. The ANN model divides the dataset into 85% training, 10% validation, and 5% testing, ensuring reliable predictions with minimal absolute error. Comparative analysis against traditional methods highlights the advantages of the ANN-based solver in handling complex, delay-integrated systems. Our results underscore the utility of integrating ANN approaches in epidemic modeling, providing insights into both short- and long-term dynamics of Ebola outbreaks. By capturing disability outcomes, this work offers a robust framework for planning healthcare interventions and optimizing resource allocation for survivor rehabilitation. The findings contribute to the development of more comprehensive models for understanding and managing infectious diseases with long-term impacts.
期刊介绍:
Computational Biology and Chemistry publishes original research papers and review articles in all areas of computational life sciences. High quality research contributions with a major computational component in the areas of nucleic acid and protein sequence research, molecular evolution, molecular genetics (functional genomics and proteomics), theory and practice of either biology-specific or chemical-biology-specific modeling, and structural biology of nucleic acids and proteins are particularly welcome. Exceptionally high quality research work in bioinformatics, systems biology, ecology, computational pharmacology, metabolism, biomedical engineering, epidemiology, and statistical genetics will also be considered.
Given their inherent uncertainty, protein modeling and molecular docking studies should be thoroughly validated. In the absence of experimental results for validation, the use of molecular dynamics simulations along with detailed free energy calculations, for example, should be used as complementary techniques to support the major conclusions. Submissions of premature modeling exercises without additional biological insights will not be considered.
Review articles will generally be commissioned by the editors and should not be submitted to the journal without explicit invitation. However prospective authors are welcome to send a brief (one to three pages) synopsis, which will be evaluated by the editors.