蒺藜果实提取物:生物活性化合物、ADMET分析及与耐甲氧西林表皮葡萄球菌青霉素结合蛋白2a转肽酶的分子对接

IF 3 3区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Current Issues in Molecular Biology Pub Date : 2025-01-15 DOI:10.3390/cimb47010052
Khalid J Alzahrani
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引用次数: 0

摘要

蒺藜是生物活性分子的丰富来源,在世界范围内的地中海和沙漠气候地区生长旺盛。本研究以蒺藜为研究对象,利用甲醇高效液相色谱法测定了蒺藜抗耐甲氧西林表皮葡萄球菌(MRSE)的活性成分和PBP2a转肽酶抑制剂。在HPLC中,甲醇提取物F02对MRSE01(15±0.13 mm)、MRSE02(13±0.21 mm)和MRSE03(16±0.14 mm)具有潜在活性。气相色谱-质谱分析鉴定出17个化合物。17种化合物中有8种具有良好的药代动力学和药物化学特性;然而,基于硅中高水溶性、高GI吸收、血脑屏障非渗透性、缺乏毒性和潜在的药物相似性,将1-乙基磺酰甲基-2,8,9-三氧杂氮-1-硅-双环[3.3.3]十一烷与邻苯二胺N-(1-羟基-2-丙基)进行分子对接。1-乙基磺酰甲基-2,8,9-三氧基-5-氮杂基-1-硅-双环[3.3.3]十一烷与PBP2a转肽酶的Ser-452、Thr-584和Asn-454残基形成3个氢键。类似地,邻苯二胺,N-(1-羟基-2-丙基)-与PBP2a转肽酶的Ser-396、Asn-454、Lys-399和Ser-452残基形成4个氢键。这两种化合物被认为是新的PBP2a转肽酶抑制剂。从蒺藜中提取的化合物的进一步表征可能有助于鉴定新的PBP2a抑制剂,用于治疗MRSE感染。
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Tribulus terrestris Fruit Extract: Bioactive Compounds, ADMET Analysis, and Molecular Docking with Penicillin-Binding Protein 2a Transpeptidase of Methicillin-Resistant Staphylococcus epidermidis.

Tribulus terrestris is a rich source of bioactive molecules and thrives in Mediterranean and desert climate regions worldwide. In this study, Tribulus terrestris methanolic HPLC fractions were evaluated for bioactive compounds and PBP2a transpeptidase inhibitors against methicillin-resistant Staphylococcus epidermidis (MRSE). Among the collected HPLC fractions, F02 of the methanol extract demonstrated potential activity against MRSE01 (15 ± 0.13 mm), MRSE02 (13 ± 0.21 mm), and MRSE03 (16 ± 0.14 mm) isolates. GC-MS analysis of the F02 fraction identified seventeen compounds. Among seventeen compounds, eight have favorable pharmacokinetics and medicinal chemistry; however, on the basis of in silico high water solubility, high GI absorption, blood-brain barrier non-permeability, lack of toxicity, and potential drug-likeness, 1-ethylsulfanylmethyl-2,8,9-trioxa-5-aza-1-sila-bicyclo[3.3.3]undecane and phthalimide, N-(1-hydroxy-2-propyl), were processed for molecular docking. 1-ethylsulfanylmethyl-2,8,9-trioxa-5-aza-1-sila-bicyclo[3.3.3]undecane formed three hydrogen bonds with Ser-452, Thr-584, and Asn-454 residues of the PBP2a transpeptidase. Similarly, phthalimide, N-(1-hydroxy-2-propyl)-formed four hydrogen bonds with Ser-396, Asn-454, Lys-399, and Ser-452 residues of PBP2a transpeptidase. These two compounds are proposed as novel putative PBP2a transpeptidase inhibitors. Further characterization of compounds extracted from Tribulus terrestris may aid in identifying novel PBP2a inhibitory agents for managing MRSE infections.

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来源期刊
Current Issues in Molecular Biology
Current Issues in Molecular Biology 生物-生化研究方法
CiteScore
2.90
自引率
3.20%
发文量
380
审稿时长
>12 weeks
期刊介绍: Current Issues in Molecular Biology (CIMB) is a peer-reviewed journal publishing review articles and minireviews in all areas of molecular biology and microbiology. Submitted articles are subject to an Article Processing Charge (APC) and are open access immediately upon publication. All manuscripts undergo a peer-review process.
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