Ada Wróblewska, Beata Ostrowiecka, Edyta Jermakowicz, Izabela Tałałaj
{"title":"食性假趾兰群体遗传结构的一致性模式。","authors":"Ada Wróblewska, Beata Ostrowiecka, Edyta Jermakowicz, Izabela Tałałaj","doi":"10.3390/genes16010067","DOIUrl":null,"url":null,"abstract":"<p><strong>Background: </strong>The patterns of inbreeding coefficients (<i>F</i><sub>IS</sub>) and fine spatial genetic structure (FSGS) were evaluated regarding the mating system and inbreeding depression of food-deceptive orchids, <i>Dactylorhiza majalis</i>, <i>Dactylorhiza incarnata</i> var. <i>incarnata</i>, and <i>Dactylorhiza fuchsii</i>, from NE Poland.</p><p><strong>Methods: </strong>We used 455 individuals, representing nine populations of three taxa and AFLPs, to estimate percent polymorphic loci and Nei's gene diversity, which are calculated using the Bayesian method; <i>F</i><sub>IS</sub>; <i>F</i><sub>ST</sub>; FSGS with the pairwise kinship coefficient (<i>Fij</i>); and AMOVA in populations.</p><p><strong>Results: </strong>We detected a relatively high proportion of polymorphic fragments (40.4-68.4%) and Nei's gene diversity indices (0.140-0.234). The overall <i>F</i><sub>IS</sub> was relatively low to moderate (0.071-0.312). The average <i>F</i>ij for the populations of three <i>Dactylorhiza</i> showed significantly positive values, which were observed between plants at distances of 1-10 m (20 m). <i>F</i><sub>ST</sub> was significant in each <i>Dactylorhiza</i> taxon, ranging from the lowest values in <i>D. fuchsii</i> and <i>D. majalis</i> (0.080-0.086, <i>p</i> < 0.05) to a higher value (0.163, <i>p</i> < 0.05) in <i>D. incarnata</i> var. <i>incarnata</i>. Molecular variance was the highest within populations (76.5-86.6%; <i>p</i> < 0.001).</p><p><strong>Conclusions: </strong>We observed concordant genetic diversity patterns in three food-deceptive, allogamous, pollinator-dependent, and self-compatible <i>Dactylorhiza</i>. <i>F</i><sub>IS</sub> is often substantially higher than <i>F</i>ij with respect to the first class of FSGSs, suggesting that selfing (meaning of geitonogamy) is at least responsible for homozygosity. A strong FSGS may have evolutionary consequences in <i>Dactylorhiza</i>, and combined with low inbreeding depression, it may impact the establishment of inbred lines of <i>D. majalis</i> and <i>D. incarnata</i> var. <i>incarnata</i>.</p>","PeriodicalId":12688,"journal":{"name":"Genes","volume":"16 1","pages":""},"PeriodicalIF":2.8000,"publicationDate":"2025-01-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11764789/pdf/","citationCount":"0","resultStr":"{\"title\":\"Concordant Patterns of Population Genetic Structure in Food-Deceptive <i>Dactylorhiza</i> Orchids.\",\"authors\":\"Ada Wróblewska, Beata Ostrowiecka, Edyta Jermakowicz, Izabela Tałałaj\",\"doi\":\"10.3390/genes16010067\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><strong>Background: </strong>The patterns of inbreeding coefficients (<i>F</i><sub>IS</sub>) and fine spatial genetic structure (FSGS) were evaluated regarding the mating system and inbreeding depression of food-deceptive orchids, <i>Dactylorhiza majalis</i>, <i>Dactylorhiza incarnata</i> var. <i>incarnata</i>, and <i>Dactylorhiza fuchsii</i>, from NE Poland.</p><p><strong>Methods: </strong>We used 455 individuals, representing nine populations of three taxa and AFLPs, to estimate percent polymorphic loci and Nei's gene diversity, which are calculated using the Bayesian method; <i>F</i><sub>IS</sub>; <i>F</i><sub>ST</sub>; FSGS with the pairwise kinship coefficient (<i>Fij</i>); and AMOVA in populations.</p><p><strong>Results: </strong>We detected a relatively high proportion of polymorphic fragments (40.4-68.4%) and Nei's gene diversity indices (0.140-0.234). The overall <i>F</i><sub>IS</sub> was relatively low to moderate (0.071-0.312). The average <i>F</i>ij for the populations of three <i>Dactylorhiza</i> showed significantly positive values, which were observed between plants at distances of 1-10 m (20 m). <i>F</i><sub>ST</sub> was significant in each <i>Dactylorhiza</i> taxon, ranging from the lowest values in <i>D. fuchsii</i> and <i>D. majalis</i> (0.080-0.086, <i>p</i> < 0.05) to a higher value (0.163, <i>p</i> < 0.05) in <i>D. incarnata</i> var. <i>incarnata</i>. Molecular variance was the highest within populations (76.5-86.6%; <i>p</i> < 0.001).</p><p><strong>Conclusions: </strong>We observed concordant genetic diversity patterns in three food-deceptive, allogamous, pollinator-dependent, and self-compatible <i>Dactylorhiza</i>. <i>F</i><sub>IS</sub> is often substantially higher than <i>F</i>ij with respect to the first class of FSGSs, suggesting that selfing (meaning of geitonogamy) is at least responsible for homozygosity. A strong FSGS may have evolutionary consequences in <i>Dactylorhiza</i>, and combined with low inbreeding depression, it may impact the establishment of inbred lines of <i>D. majalis</i> and <i>D. incarnata</i> var. <i>incarnata</i>.</p>\",\"PeriodicalId\":12688,\"journal\":{\"name\":\"Genes\",\"volume\":\"16 1\",\"pages\":\"\"},\"PeriodicalIF\":2.8000,\"publicationDate\":\"2025-01-08\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11764789/pdf/\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Genes\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://doi.org/10.3390/genes16010067\",\"RegionNum\":3,\"RegionCategory\":\"生物学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q2\",\"JCRName\":\"GENETICS & HEREDITY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Genes","FirstCategoryId":"99","ListUrlMain":"https://doi.org/10.3390/genes16010067","RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"GENETICS & HEREDITY","Score":null,"Total":0}
引用次数: 0
摘要
背景:对波兰东北部3种食骗兰花(Dactylorhiza majalis、Dactylorhiza incarnata var. incarnata和Dactylorhiza fuchsii)的交配系统和近交抑制进行了近交系数(FIS)和精细空间遗传结构(FSGS)分析。方法:利用3个类群和aflp的9个居群的455个个体,利用贝叶斯方法估算Nei’s基因多样性和多态性位点百分比;金融中间人;置;具有两两亲属系数(Fij)的FSGS;以及人群中的AMOVA。结果:检测到较高的多态性片段比例(40.4 ~ 68.4%)和Nei’s基因多样性指数(0.140 ~ 0.234)。总体FIS相对较低至中等(0.071 ~ 0.312)。在距离为1 ~ 10 m (20 m)的植物间,3个dactylorhia种群的平均Fij均呈显著正相关,FST在dactylorhia各类群中均呈显著正相关,其中fuchsii和majalis最小(0.080 ~ 0.086,p < 0.05),而incarnata var. incarnata最高(0.163,p < 0.05)。群体内分子变异最大(76.5-86.6%);P < 0.001)。结论:我们观察到三种食物欺骗、异交、传粉依赖和自亲和的dactylorhia的遗传多样性模式一致。就第一类fsgs而言,FIS通常显著高于Fij,这表明自交至少是纯合性的原因。强FSGS可能在dactylorhia中产生进化后果,并与低近交抑制相结合,可能影响D. majalis和D. incarnata var. incarnata自交系的建立。
Concordant Patterns of Population Genetic Structure in Food-Deceptive Dactylorhiza Orchids.
Background: The patterns of inbreeding coefficients (FIS) and fine spatial genetic structure (FSGS) were evaluated regarding the mating system and inbreeding depression of food-deceptive orchids, Dactylorhiza majalis, Dactylorhiza incarnata var. incarnata, and Dactylorhiza fuchsii, from NE Poland.
Methods: We used 455 individuals, representing nine populations of three taxa and AFLPs, to estimate percent polymorphic loci and Nei's gene diversity, which are calculated using the Bayesian method; FIS; FST; FSGS with the pairwise kinship coefficient (Fij); and AMOVA in populations.
Results: We detected a relatively high proportion of polymorphic fragments (40.4-68.4%) and Nei's gene diversity indices (0.140-0.234). The overall FIS was relatively low to moderate (0.071-0.312). The average Fij for the populations of three Dactylorhiza showed significantly positive values, which were observed between plants at distances of 1-10 m (20 m). FST was significant in each Dactylorhiza taxon, ranging from the lowest values in D. fuchsii and D. majalis (0.080-0.086, p < 0.05) to a higher value (0.163, p < 0.05) in D. incarnata var. incarnata. Molecular variance was the highest within populations (76.5-86.6%; p < 0.001).
Conclusions: We observed concordant genetic diversity patterns in three food-deceptive, allogamous, pollinator-dependent, and self-compatible Dactylorhiza. FIS is often substantially higher than Fij with respect to the first class of FSGSs, suggesting that selfing (meaning of geitonogamy) is at least responsible for homozygosity. A strong FSGS may have evolutionary consequences in Dactylorhiza, and combined with low inbreeding depression, it may impact the establishment of inbred lines of D. majalis and D. incarnata var. incarnata.
期刊介绍:
Genes (ISSN 2073-4425) is an international, peer-reviewed open access journal which provides an advanced forum for studies related to genes, genetics and genomics. It publishes reviews, research articles, communications and technical notes. There is no restriction on the length of the papers and we encourage scientists to publish their results in as much detail as possible.