肺泡巨噬细胞PPARG/SPP1/CD44信号通路:特发性肺纤维化中脂质失调的机制和治疗靶点。

IF 3.6 3区 综合性期刊 Q1 MULTIDISCIPLINARY SCIENCES Heliyon Pub Date : 2025-01-02 eCollection Date: 2025-01-15 DOI:10.1016/j.heliyon.2025.e41628
Ganggang Li, Yuwei Zhang, Huanyu Jiang, Xuanyu Wu, Yanwei Hao, Yuchen Su, Yutong Zou, Wenjia Xian, Fei Wang, Quanyu Du
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引用次数: 0

摘要

特发性肺纤维化(IPF)是一种慢性进行性间质性肺疾病。它的特点是肺实质和间质炎症和纤维化。鉴于其预后不良和治疗选择有限,了解潜在的分子机制至关重要。最近的证据表明,脂质代谢在IPF发病机制中起关键作用,然而,确切的机制仍然知之甚少。为了解决这个问题,我们使用机器学习方法分析了来自GEO数据库的12个批量RNA-seq和2个单细胞RNA-seq数据集。因此,我们确定了四个关键的脂质相关基因——pparg、SPP1、CASP3和pecam1,它们在各种细胞类型中表达。具体来说,在肺泡巨噬细胞(AMs)中,我们观察到PPARG显著下调,而SPP1高表达。重要的是,PPARG作为SPP1的转录调节因子,SPP1反过来通过CD44介导细胞间信号传导。基于这些发现,我们在AMs中提出了一种新的PPARG/SPP1/CD44信号通路,该信号通路调节脂质代谢,可能有助于IPF中纤维化的进展。此外,网络药理学分析确定了几种靶向PPARG的草药化合物,提供了潜在的治疗机会。总之,这些发现强调了脂质代谢在IPF中的关键作用,并为未来治疗策略的发展提供了新的分子靶点。
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PPARG/SPP1/CD44 signaling pathway in alveolar macrophages: Mechanisms of lipid dysregulation and therapeutic targets in idiopathic pulmonary fibrosis.

Idiopathic pulmonary fibrosis (IPF) is a chronic and progressive interstitial lung disease. It is characterized by inflammation and fibrosis in the lung parenchyma and interstitium. Given its poor prognosis and limited treatment options, understanding the underlying molecular mechanisms is crucial. Recent evidence suggests that lipid metabolism plays a pivotal role in IPF pathogenesis, however, the precise mechanisms remain poorly understood. To address this, we analyzed 12 bulk RNA-seq and 2 single-cell RNA-seq datasets from the GEO database using machine learning approaches. As a result, we identified four key lipid-related genes-PPARG, SPP1, CASP3, and PECAM1-that are expressed across various cell types. Specifically, in alveolar macrophages (AMs), we observed that PPARG was significantly downregulated, while SPP1 was highly expressed. Importantly, PPARG serves as a transcriptional regulator of SPP1, which in turn mediates intercellular signaling via CD44. Based on these findings, we propose a novel PPARG/SPP1/CD44 signaling pathway in AMs, which modulates lipid metabolism and likely contributes to the progression of fibrosis in IPF. Moreover, network pharmacology analysis identified several herbal compounds that target PPARG, offering potential therapeutic opportunities. In conclusion, these findings highlight the critical role of lipid metabolism in IPF and present novel molecular targets for the development of future therapeutic strategies.

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来源期刊
Heliyon
Heliyon MULTIDISCIPLINARY SCIENCES-
CiteScore
4.50
自引率
2.50%
发文量
2793
期刊介绍: Heliyon is an all-science, open access journal that is part of the Cell Press family. Any paper reporting scientifically accurate and valuable research, which adheres to accepted ethical and scientific publishing standards, will be considered for publication. Our growing team of dedicated section editors, along with our in-house team, handle your paper and manage the publication process end-to-end, giving your research the editorial support it deserves.
期刊最新文献
Corrigendum to "Short-term outcomes of robot-assisted minimally invasive surgery for brainstem hemorrhage: A case-control study" [Heliyon Volume 10, Issue 4, February 2024, Article e25912]. Retraction notice to "Enhancing data security and privacy in energy applications: Integrating IoT and blockchain technologies" [Heliyon 10 (2024) e38917]. Retraction notice to "CREB1 promotes cholangiocarcinoma metastasis through transcriptional regulation of the LAYN-mediated TLN1/β1 integrin axis" [Heliyon 10 (2024) e36595]. Retraction notice to "Experimental investigations of dual functional substrate integrated waveguide antenna with enhanced directivity for 5G mobile communications" [Heliyon 10 (2024) e36929]. Retraction notice to "Nutritional and bioactive properties and antioxidant potential of Amaranthus tricolor, A. lividus, A viridis, and A. spinosus leafy vegetables" [Heliyon 10 (2024) e30453].
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