Angelo Genghi, Mário João Fartaria, Anna Siroki-Galambos, Simon Flückiger, Fernando Franco, Adam Strzelecki, Pascal Paysan, Julius Turian, Zhen Wu, Luca Boldrini, Giuditta Chiloiro, Thomas Costantino, Justin English, Tomasz Morgas, Thomas Coradi
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Neural networks for auto-contouring of head and neck and bowel structures were trained with and without pCBCT data. Quantitative and qualitative assessment was done in two independent test sets containing CT and real CBCT data focus on four anatomical regions: head, neck, abdomen, and pelvis. Qualitative analyses were conducted by five clinical experts from three different healthcare institutions.<i>Main results.</i>The generated pCBCT images demonstrate realistic motion artifacts comparable to those observed in real CBCT data. Training a neural network with CT and pCBCT data improved Dice similarity coefficient (DSC) and average contour distance (ACD) results on CBCT test sets. The results were statistically significant (<i>p</i>-value ⩽.03) for bone-mandible (model without/with pCBCT: 0.91/0.92 DSC,<i>p</i>⩽ .01; 0.74/0.66 mm ACD,<i>p</i>⩽.01), brain (0.34/0.93 DSC,<i>p</i>⩽ 1 × 10<sup>-5</sup>; 17.5/2.79 mm ACD,<i>p</i>= 1 × 10<sup>-5</sup>), oral-cavity (0.81/0.83 DSC,<i>p</i>⩽.01; 5.11/4.61 mm ACD,<i>p</i>= .02), left-submandibular-gland (0.58/0.77 DSC,<i>p</i>⩽.001; 3.24/2.12 mm ACD,<i>p</i>⩽ .001), right-submandibular-gland (0.00/0.75 DSC,<i>p</i>⩽.1 × 10<sup>-5</sup>; 17.5/2.26 mm ACD,<i>p</i>⩽ 1 × 10<sup>-5</sup>), left-parotid (0.68/0.78 DSC,<i>p</i>⩽ .001; 3.34/2.58 mm ACD,<i>p</i>⩽.01), large-bowel (0.60/0.75 DSC,<i>p</i>⩽ .01; 6.14/4.56 mm ACD,<i>p</i>= .03) and small-bowel (3.08/2.65 mm ACD,<i>p</i>= .03). Visual evaluation showed fewer false positives, false negatives, and misclassifications in artifact-affected areas. Qualitative analyses demonstrated that, auto-generated contours are clinically acceptable in over 90% of cases for most structures, with only a few requiring adjustments.<i>Significance.</i>The inclusion of pCBCT improves the performance of trainable auto-contouring approaches, particularly in cases where the images are prone to severe artifacts.</p>","PeriodicalId":20185,"journal":{"name":"Physics in medicine and biology","volume":"70 3","pages":""},"PeriodicalIF":3.4000,"publicationDate":"2025-01-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Augmenting motion artifacts to enhance auto-contouring of complex structures in cone-beam computed tomography imaging.\",\"authors\":\"Angelo Genghi, Mário João Fartaria, Anna Siroki-Galambos, Simon Flückiger, Fernando Franco, Adam Strzelecki, Pascal Paysan, Julius Turian, Zhen Wu, Luca Boldrini, Giuditta Chiloiro, Thomas Costantino, Justin English, Tomasz Morgas, Thomas Coradi\",\"doi\":\"10.1088/1361-6560/ada0a0\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p><i>Objective</i>. 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The results were statistically significant (<i>p</i>-value ⩽.03) for bone-mandible (model without/with pCBCT: 0.91/0.92 DSC,<i>p</i>⩽ .01; 0.74/0.66 mm ACD,<i>p</i>⩽.01), brain (0.34/0.93 DSC,<i>p</i>⩽ 1 × 10<sup>-5</sup>; 17.5/2.79 mm ACD,<i>p</i>= 1 × 10<sup>-5</sup>), oral-cavity (0.81/0.83 DSC,<i>p</i>⩽.01; 5.11/4.61 mm ACD,<i>p</i>= .02), left-submandibular-gland (0.58/0.77 DSC,<i>p</i>⩽.001; 3.24/2.12 mm ACD,<i>p</i>⩽ .001), right-submandibular-gland (0.00/0.75 DSC,<i>p</i>⩽.1 × 10<sup>-5</sup>; 17.5/2.26 mm ACD,<i>p</i>⩽ 1 × 10<sup>-5</sup>), left-parotid (0.68/0.78 DSC,<i>p</i>⩽ .001; 3.34/2.58 mm ACD,<i>p</i>⩽.01), large-bowel (0.60/0.75 DSC,<i>p</i>⩽ .01; 6.14/4.56 mm ACD,<i>p</i>= .03) and small-bowel (3.08/2.65 mm ACD,<i>p</i>= .03). Visual evaluation showed fewer false positives, false negatives, and misclassifications in artifact-affected areas. 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引用次数: 0
摘要
目标。开发一种模拟锥形束计算机断层扫描(CBCT)相关运动伪影的增强方法,该方法可用于生成训练数据,以提高用于自动轮廓任务的人工智能模型的性能。方法:增强技术生成模拟CBCT成像中典型伪影的数据。模拟的伪cbct (pCBCT)是使用模拟屏气和自由呼吸投影的交错序列创建的。使用和不使用pCBCT数据训练用于头颈部和肠道结构自动轮廓的神经网络。定量和定性评估在两个独立的测试集中进行,包括CT和真实CBCT数据,重点关注四个解剖区域:头、颈、腹和骨盆。来自三家不同医疗机构的五名临床专家进行了定性分析。主要的结果。生成的pCBCT图像显示出与真实CBCT数据中观察到的相似的逼真运动伪影。用CT和pCBCT数据训练神经网络,可以改善CBCT测试集上的骰子相似系数(DSC)和平均轮廓距离(ACD)结果。骨-下颌骨(无/有pCBCT模型:0.91/0.92 DSC,p < 0.01)的结果具有统计学意义(p < 0.01);0.74/0.66 mm ACD,p < 0.01),脑(0.34/0.93 DSC,p < 1 × 10-5;17.5/2.79 mm ACD,p= 1 × 10-5),口腔(0.81/0.83 DSC,p≤0.01;5.11/4.61 mm ACD,p= 0.02),左侧颌下腺(0.58/0.77 DSC,p≤0.001;3.24/2.12 mm ACD,p < 0.001),右侧颌下腺(0.00/0.75 DSC,p < 0.001)。1 × 10-5;17.5/2.26 mm ACD,p≤1 × 10-5),左腮腺(0.68/0.78 DSC,p≤0.001;3.34/2.58 mm ACD,p < 0.01),大肠(0.60/0.75 DSC,p < 0.01;6.14/4.56 mm ACD,p= .03)和小肠(3.08/2.65 mm ACD,p= .03)。视觉评估显示,在人工制品影响区域,假阳性、假阴性和错误分类较少。定性分析表明,在大多数结构中,超过90%的情况下,自动生成的轮廓在临床上是可接受的,只有少数需要调整。意义:pCBCT的加入提高了可训练的自动轮廓方法的性能,特别是在图像容易出现严重伪影的情况下。
Augmenting motion artifacts to enhance auto-contouring of complex structures in cone-beam computed tomography imaging.
Objective. To develop an augmentation method that simulates cone-beam computed tomography (CBCT) related motion artifacts, which can be used to generate training-data to increase the performance of artificial intelligence models dedicated to auto-contouring tasks.Approach.The augmentation technique generates data that simulates artifacts typically present in CBCT imaging. The simulated pseudo-CBCT (pCBCT) is created using interleaved sequences of simulated breath-hold and free-breathing projections. Neural networks for auto-contouring of head and neck and bowel structures were trained with and without pCBCT data. Quantitative and qualitative assessment was done in two independent test sets containing CT and real CBCT data focus on four anatomical regions: head, neck, abdomen, and pelvis. Qualitative analyses were conducted by five clinical experts from three different healthcare institutions.Main results.The generated pCBCT images demonstrate realistic motion artifacts comparable to those observed in real CBCT data. Training a neural network with CT and pCBCT data improved Dice similarity coefficient (DSC) and average contour distance (ACD) results on CBCT test sets. The results were statistically significant (p-value ⩽.03) for bone-mandible (model without/with pCBCT: 0.91/0.92 DSC,p⩽ .01; 0.74/0.66 mm ACD,p⩽.01), brain (0.34/0.93 DSC,p⩽ 1 × 10-5; 17.5/2.79 mm ACD,p= 1 × 10-5), oral-cavity (0.81/0.83 DSC,p⩽.01; 5.11/4.61 mm ACD,p= .02), left-submandibular-gland (0.58/0.77 DSC,p⩽.001; 3.24/2.12 mm ACD,p⩽ .001), right-submandibular-gland (0.00/0.75 DSC,p⩽.1 × 10-5; 17.5/2.26 mm ACD,p⩽ 1 × 10-5), left-parotid (0.68/0.78 DSC,p⩽ .001; 3.34/2.58 mm ACD,p⩽.01), large-bowel (0.60/0.75 DSC,p⩽ .01; 6.14/4.56 mm ACD,p= .03) and small-bowel (3.08/2.65 mm ACD,p= .03). Visual evaluation showed fewer false positives, false negatives, and misclassifications in artifact-affected areas. Qualitative analyses demonstrated that, auto-generated contours are clinically acceptable in over 90% of cases for most structures, with only a few requiring adjustments.Significance.The inclusion of pCBCT improves the performance of trainable auto-contouring approaches, particularly in cases where the images are prone to severe artifacts.
期刊介绍:
The development and application of theoretical, computational and experimental physics to medicine, physiology and biology. Topics covered are: therapy physics (including ionizing and non-ionizing radiation); biomedical imaging (e.g. x-ray, magnetic resonance, ultrasound, optical and nuclear imaging); image-guided interventions; image reconstruction and analysis (including kinetic modelling); artificial intelligence in biomedical physics and analysis; nanoparticles in imaging and therapy; radiobiology; radiation protection and patient dose monitoring; radiation dosimetry