Shin-nosuke Nishimura, Yuta Kashihara, Tomoyuki Koga
{"title":"水合聚合物玻璃化转变温度的简单机器学习模型","authors":"Shin-nosuke Nishimura, Yuta Kashihara, Tomoyuki Koga","doi":"10.1038/s41428-024-00981-y","DOIUrl":null,"url":null,"abstract":"The glass transition temperature under dry conditions (Tg,dry) is an important factor for understanding the properties of polymeric materials; however, Tg,dry is often not a suitable factor for understanding the functions of biomaterials because these materials are used in water or are in contact with water. Therefore, the glass transition temperature under hydrated conditions (Tg,wet) is a crucial thermal property of polymers, particularly biomaterials. Traditional Tg,wet measurements require significant skill and are prone to error. To address this, we developed a machine learning (ML) model to predict Tg,wet from the polymer structures using a small dataset of 33 polymers. SMILES was used to generate Morgan fingerprints (MFPs) and SMILES-fragments (FLs), which serve as descriptors for the ML models. We used both random forest (RF) and ridge regression (RR) algorithms, and these algorithms were optimizing through grid search and cross-validation. The ML models using only chemical structure descriptors (MFP and FL) exhibited poor predictive performance and showed overfitting. However, when the values of Tg,dry were included as an explanatory variable, the RR model using MFP provided the best performance. These results highlight the importance of incorporating the data of Tg,dry to enhance the prediction of Tg,wet. Our model has the potential to facilitate the design of functional biomaterials. The glass transition temperature of the dry polymers (Tg,dry) is a useful parameter for predicting that of hydrated polymers (Tg,wet). By combining Tg,dry and chemical structures, simple machine learning models for Tg,wet can be constructed even with a small dataset.","PeriodicalId":20302,"journal":{"name":"Polymer Journal","volume":"57 2","pages":"225-231"},"PeriodicalIF":2.3000,"publicationDate":"2024-11-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Simple machine learning model for the glass transition temperatures of hydrated polymers\",\"authors\":\"Shin-nosuke Nishimura, Yuta Kashihara, Tomoyuki Koga\",\"doi\":\"10.1038/s41428-024-00981-y\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"The glass transition temperature under dry conditions (Tg,dry) is an important factor for understanding the properties of polymeric materials; however, Tg,dry is often not a suitable factor for understanding the functions of biomaterials because these materials are used in water or are in contact with water. Therefore, the glass transition temperature under hydrated conditions (Tg,wet) is a crucial thermal property of polymers, particularly biomaterials. Traditional Tg,wet measurements require significant skill and are prone to error. To address this, we developed a machine learning (ML) model to predict Tg,wet from the polymer structures using a small dataset of 33 polymers. SMILES was used to generate Morgan fingerprints (MFPs) and SMILES-fragments (FLs), which serve as descriptors for the ML models. We used both random forest (RF) and ridge regression (RR) algorithms, and these algorithms were optimizing through grid search and cross-validation. The ML models using only chemical structure descriptors (MFP and FL) exhibited poor predictive performance and showed overfitting. However, when the values of Tg,dry were included as an explanatory variable, the RR model using MFP provided the best performance. These results highlight the importance of incorporating the data of Tg,dry to enhance the prediction of Tg,wet. Our model has the potential to facilitate the design of functional biomaterials. The glass transition temperature of the dry polymers (Tg,dry) is a useful parameter for predicting that of hydrated polymers (Tg,wet). By combining Tg,dry and chemical structures, simple machine learning models for Tg,wet can be constructed even with a small dataset.\",\"PeriodicalId\":20302,\"journal\":{\"name\":\"Polymer Journal\",\"volume\":\"57 2\",\"pages\":\"225-231\"},\"PeriodicalIF\":2.3000,\"publicationDate\":\"2024-11-11\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Polymer Journal\",\"FirstCategoryId\":\"92\",\"ListUrlMain\":\"https://www.nature.com/articles/s41428-024-00981-y\",\"RegionNum\":4,\"RegionCategory\":\"化学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q3\",\"JCRName\":\"POLYMER SCIENCE\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Polymer Journal","FirstCategoryId":"92","ListUrlMain":"https://www.nature.com/articles/s41428-024-00981-y","RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q3","JCRName":"POLYMER SCIENCE","Score":null,"Total":0}
Simple machine learning model for the glass transition temperatures of hydrated polymers
The glass transition temperature under dry conditions (Tg,dry) is an important factor for understanding the properties of polymeric materials; however, Tg,dry is often not a suitable factor for understanding the functions of biomaterials because these materials are used in water or are in contact with water. Therefore, the glass transition temperature under hydrated conditions (Tg,wet) is a crucial thermal property of polymers, particularly biomaterials. Traditional Tg,wet measurements require significant skill and are prone to error. To address this, we developed a machine learning (ML) model to predict Tg,wet from the polymer structures using a small dataset of 33 polymers. SMILES was used to generate Morgan fingerprints (MFPs) and SMILES-fragments (FLs), which serve as descriptors for the ML models. We used both random forest (RF) and ridge regression (RR) algorithms, and these algorithms were optimizing through grid search and cross-validation. The ML models using only chemical structure descriptors (MFP and FL) exhibited poor predictive performance and showed overfitting. However, when the values of Tg,dry were included as an explanatory variable, the RR model using MFP provided the best performance. These results highlight the importance of incorporating the data of Tg,dry to enhance the prediction of Tg,wet. Our model has the potential to facilitate the design of functional biomaterials. The glass transition temperature of the dry polymers (Tg,dry) is a useful parameter for predicting that of hydrated polymers (Tg,wet). By combining Tg,dry and chemical structures, simple machine learning models for Tg,wet can be constructed even with a small dataset.
期刊介绍:
Polymer Journal promotes research from all aspects of polymer science from anywhere in the world and aims to provide an integrated platform for scientific communication that assists the advancement of polymer science and related fields. The journal publishes Original Articles, Notes, Short Communications and Reviews.
Subject areas and topics of particular interest within the journal''s scope include, but are not limited to, those listed below:
Polymer synthesis and reactions
Polymer structures
Physical properties of polymers
Polymer surface and interfaces
Functional polymers
Supramolecular polymers
Self-assembled materials
Biopolymers and bio-related polymer materials
Polymer engineering.