最大熵介导的液固成核和转变。

IF 5.5 1区 化学 Q2 CHEMISTRY, PHYSICAL Journal of Chemical Theory and Computation Pub Date : 2025-02-25 Epub Date: 2025-02-12 DOI:10.1021/acs.jctc.4c01621
Lars Dammann, Richard Kohns, Patrick Huber, Robert H Meißner
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引用次数: 0

摘要

分子动力学(MD)模拟是在原子尺度上研究物质的有力工具。然而,要模拟固体,初始原子结构对于成功执行MD模拟至关重要,但由于原子信息不足,很难准备。同时,广角x射线散射(WAXS)测量可以确定原子结构的径向分布函数(RDF)。然而,rdf的解释通常是具有挑战性的。本文提出了一种基于最大相对熵原理,结合原子相互作用势信息和RDF信息的MD模拟偏置算法。结果表明,该算法可用于调整一种液体模型(如TIP3P水模型)的RDF,以再现另一种模型(如TIP4P/2005水模型)的RDF,并改善其角分布函数(ADF)。此外,我们证明了该算法可以在液体系统中启动结晶,导致RDF定义的稳定和亚稳态结晶状态,例如,水结晶为冰,液体TiO2结晶为金红石或锐钛矿。最后,我们讨论了这种方法如何在改进相互作用模型、研究结晶过程、解释测量的rdf或训练机器学习电位方面发挥作用。
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Maximum Entropy-Mediated Liquid-to-Solid Nucleation and Transition.

Molecular dynamics (MD) simulations are a powerful tool for studying matter at the atomic scale. However, to simulate solids, an initial atomic structure is crucial for the successful execution of MD simulations but can be difficult to prepare due to insufficient atomistic information. At the same time, wide-angle X-ray scattering (WAXS) measurements can determine the radial distribution function (RDF) of atomic structures. However, the interpretation of RDFs is often challenging. Here, we present an algorithm that can bias MD simulations with RDFs by combining the information on the MD atomic interaction potential and the RDF under the principle of maximum relative entropy. We show that this algorithm can be used to adjust the RDF of one liquid model, e.g., the TIP3P water model, to reproduce the RDF and improve the angular distribution function (ADF) of another model, such as the TIP4P/2005 water model. In addition, we demonstrate that the algorithm can initiate crystallization in liquid systems, leading to both stable and metastable crystalline states defined by the RDF, e.g., crystallization of water to ice and liquid TiO2 to rutile or anatase. Finally, we discuss how this method can be useful for improving interaction models, studying crystallization processes, interpreting measured RDFs, or training machine-learned potentials.

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来源期刊
Journal of Chemical Theory and Computation
Journal of Chemical Theory and Computation 化学-物理:原子、分子和化学物理
CiteScore
9.90
自引率
16.40%
发文量
568
审稿时长
1 months
期刊介绍: The Journal of Chemical Theory and Computation invites new and original contributions with the understanding that, if accepted, they will not be published elsewhere. Papers reporting new theories, methodology, and/or important applications in quantum electronic structure, molecular dynamics, and statistical mechanics are appropriate for submission to this Journal. Specific topics include advances in or applications of ab initio quantum mechanics, density functional theory, design and properties of new materials, surface science, Monte Carlo simulations, solvation models, QM/MM calculations, biomolecular structure prediction, and molecular dynamics in the broadest sense including gas-phase dynamics, ab initio dynamics, biomolecular dynamics, and protein folding. The Journal does not consider papers that are straightforward applications of known methods including DFT and molecular dynamics. The Journal favors submissions that include advances in theory or methodology with applications to compelling problems.
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