IF 1.9 Q3 GENETICS & HEREDITY BMC genomic data Pub Date : 2025-02-21 DOI:10.1186/s12863-025-01299-1
Molemi Rauwane, Sandiswa Figlan, Wai Yin Chan, Khayalethu Ntushelo
{"title":"Draft genome sequence of the fungal pathogen Penicillium expansum (PPRI25879) isolated in South Africa.","authors":"Molemi Rauwane, Sandiswa Figlan, Wai Yin Chan, Khayalethu Ntushelo","doi":"10.1186/s12863-025-01299-1","DOIUrl":null,"url":null,"abstract":"<p><strong>Objectives: </strong>Penicillium expansum, a necrotrophic plant pathogen with a wide range of fruit hosts, is an important causal agent of blue mold rot. The fruit business suffers significant financial losses because of blue mold rot that occurs during fruit storage, transportation, and sale. The objective of this work was to generate a high-quality draft genome assembly of P. expansum, which will contribute to enhancing the management of blue mold, especially in stone and pome fruits, including grapes, by improving our understanding of the epidemiology of the pathogen and its interactions with the host.</p><p><strong>Data description: </strong>Here, we describe the genome sequence of Penicillium expansum isolate PPRI25879, one of the most virulent strains isolated from grapes in South Africa. Sequencing reads from P. expansum produced approximately 3.5 Gb. The assembly generated a draft genome of size 32.1 Mb, consisting of 1648 contigs, with an N50 of 508 KB. Examination of the genome completeness with Benchmarking Universal Single-Copy Orthologs (BUSCO) showed the draft genome carries 97.9% of the 746 genes in the Eurotiomycetes_odb10 database. The draft genome sequence will allow improved genomic comparisons among the most important pathogens belonging to the Penicillium genus, with the aim of improving our knowledge of their plant-pathogen interactions, population biology, and control.</p>","PeriodicalId":72427,"journal":{"name":"BMC genomic data","volume":"26 1","pages":"14"},"PeriodicalIF":1.9000,"publicationDate":"2025-02-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11846280/pdf/","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"BMC genomic data","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.1186/s12863-025-01299-1","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q3","JCRName":"GENETICS & HEREDITY","Score":null,"Total":0}
引用次数: 0

摘要

目的:扩张青霉是一种坏死性植物病原菌,寄主广泛,是蓝霉病的重要病原菌。由于在水果贮藏、运输和销售过程中发生的蓝霉病,水果业遭受了巨大的经济损失。这项工作的目的是生成扩张型蓝霉菌的高质量基因组组装草案,通过提高我们对该病原体的流行病学及其与寄主相互作用的了解,有助于加强对蓝霉菌的管理,尤其是对包括葡萄在内的核果类水果的管理:在此,我们描述了扩张青霉分离株 PPRI25879 的基因组序列,这是南非葡萄中分离出的毒性最强的菌株之一。来自扩张青霉的测序读数约为 3.5 Gb。组装生成的基因组草案大小为 32.1 Mb,由 1648 个等位基因组成,N50 为 508 KB。利用通用单拷贝同源物基准(BUSCO)对基因组的完整性进行的检查显示,该基因组草案携带了 Eurotiomycetes_odb10 数据库中 746 个基因的 97.9%。该基因组序列草案将有助于改进青霉属最重要病原体之间的基因组比较,从而提高我们对植物病原体相互作用、种群生物学和控制的认识。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
查看原文
分享 分享
微信好友 朋友圈 QQ好友 复制链接
本刊更多论文
Draft genome sequence of the fungal pathogen Penicillium expansum (PPRI25879) isolated in South Africa.

Objectives: Penicillium expansum, a necrotrophic plant pathogen with a wide range of fruit hosts, is an important causal agent of blue mold rot. The fruit business suffers significant financial losses because of blue mold rot that occurs during fruit storage, transportation, and sale. The objective of this work was to generate a high-quality draft genome assembly of P. expansum, which will contribute to enhancing the management of blue mold, especially in stone and pome fruits, including grapes, by improving our understanding of the epidemiology of the pathogen and its interactions with the host.

Data description: Here, we describe the genome sequence of Penicillium expansum isolate PPRI25879, one of the most virulent strains isolated from grapes in South Africa. Sequencing reads from P. expansum produced approximately 3.5 Gb. The assembly generated a draft genome of size 32.1 Mb, consisting of 1648 contigs, with an N50 of 508 KB. Examination of the genome completeness with Benchmarking Universal Single-Copy Orthologs (BUSCO) showed the draft genome carries 97.9% of the 746 genes in the Eurotiomycetes_odb10 database. The draft genome sequence will allow improved genomic comparisons among the most important pathogens belonging to the Penicillium genus, with the aim of improving our knowledge of their plant-pathogen interactions, population biology, and control.

求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
CiteScore
4.90
自引率
0.00%
发文量
0
期刊最新文献
217 closed Salmonella reference genomes using PacBio sequencing. Draft genome sequence of the fungal pathogen Penicillium expansum (PPRI25879) isolated in South Africa. Transcriptome profiling across 11 different tissues in Pisum sativum. Complete genome assemblies and antibiograms of 22 Staphylococcus capitis isolates. Genome-wide DNA polymorphisms in two peatland adapted Coffea liberica varieties.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
已复制链接
已复制链接
快去分享给好友吧!
我知道了
×
扫码分享
扫码分享
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1