用于预测乳酸菌与单核增生李斯特菌相互作用行为的机器学习辅助软件的开发。

IF 3.9 3区 生物学 Q1 BIOLOGY Life-Basel Pub Date : 2025-02-06 DOI:10.3390/life15020244
Fatih Tarlak, Jean Carlos Correia Peres Costa, Ozgun Yucel
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摘要

生物保存技术已经成为利用有益微生物的抗菌特性来提高食品安全性和延长保质期的一种有前途的方法。本研究旨在建立精确的预测模型,以表征乳酸菌和单核增生李斯特菌在食品系统中的生长和相互作用动力学。使用传统和机器学习建模方法,我们分析了以前发表的在等温条件下(4、10和30°C)肉汤(BHI)和牛奶中的生长曲线数据。这些模型评估了单核增生乳杆菌和乳酸菌的单培养条件,以及它们在共培养情况下的竞争相互作用。修正后的Gompertz模型在单培养模拟中表现最佳,而修正后的Gompertz模型和Lotka-Volterra模型的组合有效地描述了共培养的相互作用,对BHI和牛奶分别获得了较高的调整r方值(调整R2 = 0.978和0.962)和较低的均方根误差(RMSE = 0.324和0.507)。机器学习方法通过改进的统计指标(调整后的R2分别为0.988和0.966,BHI和牛奶的RMSE分别为0.242和0.475)进一步验证了这些发现,表明它们有潜力成为传统方法的强大替代品。在这项工作中开发的机器学习辅助软件集成到预测微生物学中,通过绕过传统的一级和二级建模步骤,实现了对食品中微生物相互作用的精简、精确表征,显示了显著的进步。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

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The Development of Machine Learning-Assisted Software for Predicting the Interaction Behaviours of Lactic Acid Bacteria and Listeria monocytogenes.

Biopreservation technology has emerged as a promising approach to enhance food safety and extend shelf life by leveraging the antimicrobial properties of beneficial microorganisms. This study aims to develop precise predictive models to characterize the growth and interaction dynamics of lactic acid bacteria (LAB) and Listeria monocytogenes, which serve as bioprotective agents in food systems. Using both traditional and machine learning modelling approaches, we analyzed data from previously published growth curves in broth (BHI) and milk under isothermal conditions (4, 10, and 30 °C). The models evaluated mono-culture conditions for L. monocytogenes and LAB, as well as their competitive interactions in co-culture scenarios. The modified Gompertz model demonstrated the best performance for mono-culture simulations, while a combination of the modified Gompertz and Lotka-Volterra models effectively described co-culture interactions, achieving high adjusted R-squared values (adjusted R2 = 0.978 and 0.962) and low root mean square errors (RMSE = 0.324 and 0.507) for BHI and milk, respectively. Machine learning approaches further validated these findings, with improved statistical indices (adjusted R2 = 0.988 and 0.966, RMSE = 0.242 and 0.475 for BHI and milk, respectively), suggesting their potential as robust alternatives to traditional methods. The integration of machine learning-assisted software developed in this work into predictive microbiology demonstrates significant advancements by bypassing the conventional primary and secondary modelling steps, enabling a streamlined, precise characterization of microbial interactions in food products.

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来源期刊
Life-Basel
Life-Basel Biochemistry, Genetics and Molecular Biology-General Biochemistry,Genetics and Molecular Biology
CiteScore
4.30
自引率
6.20%
发文量
1798
审稿时长
11 weeks
期刊介绍: Life (ISSN 2075-1729) is an international, peer-reviewed open access journal of scientific studies related to fundamental themes in Life Sciences, especially those concerned with the origins of life and evolution of biosystems. Our aim is to encourage scientists to publish their experimental and theoretical results in as much detail as possible. There is no restriction on the length of the papers.
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