基于神经网络的氡拾峰器

Ewa K. Nawrocka , Daniel Dahan , Krzysztof Kazimierczuk , Przemysław Olbratowski
{"title":"基于神经网络的氡拾峰器","authors":"Ewa K. Nawrocka ,&nbsp;Daniel Dahan ,&nbsp;Krzysztof Kazimierczuk ,&nbsp;Przemysław Olbratowski","doi":"10.1016/j.jmro.2022.100083","DOIUrl":null,"url":null,"abstract":"<div><p>Serial acquisition of one-dimensional NMR spectra appears in many contexts, e.g. in variable-temperature studies or reaction monitoring. In a conventional approach, the spectra are processed separately, and standard peak-picking is performed in each of them. Yet, when chemical shifts change linearly between spectra, the Radon transform (RT) is more effective than conventional data processing, since it provides sensitivity and resolution gains. RT results in a two-dimensional (2D) spectrum with one dimension corresponding to resonance frequencies and the other to their rates of change. However, the lineshapes in 2D RT spectra are not 2D lorentzians, and thus available spectral peak-pickers cannot effectively deal with them. We propose a solution to this problem — a peak-picker dedicated to 2D RT spectra and based on a U-Net neural network. The software contains a user-friendly graphical interface. We test the program on three challenging serial data sets to demonstrate the robustness to peak overlap, complex multiplet structures and low signal-to-noise ratio.</p></div>","PeriodicalId":365,"journal":{"name":"Journal of Magnetic Resonance Open","volume":null,"pages":null},"PeriodicalIF":2.6240,"publicationDate":"2022-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"2","resultStr":"{\"title\":\"Radon peak-picker based on a neural network\",\"authors\":\"Ewa K. Nawrocka ,&nbsp;Daniel Dahan ,&nbsp;Krzysztof Kazimierczuk ,&nbsp;Przemysław Olbratowski\",\"doi\":\"10.1016/j.jmro.2022.100083\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><p>Serial acquisition of one-dimensional NMR spectra appears in many contexts, e.g. in variable-temperature studies or reaction monitoring. In a conventional approach, the spectra are processed separately, and standard peak-picking is performed in each of them. Yet, when chemical shifts change linearly between spectra, the Radon transform (RT) is more effective than conventional data processing, since it provides sensitivity and resolution gains. RT results in a two-dimensional (2D) spectrum with one dimension corresponding to resonance frequencies and the other to their rates of change. However, the lineshapes in 2D RT spectra are not 2D lorentzians, and thus available spectral peak-pickers cannot effectively deal with them. We propose a solution to this problem — a peak-picker dedicated to 2D RT spectra and based on a U-Net neural network. The software contains a user-friendly graphical interface. We test the program on three challenging serial data sets to demonstrate the robustness to peak overlap, complex multiplet structures and low signal-to-noise ratio.</p></div>\",\"PeriodicalId\":365,\"journal\":{\"name\":\"Journal of Magnetic Resonance Open\",\"volume\":null,\"pages\":null},\"PeriodicalIF\":2.6240,\"publicationDate\":\"2022-12-01\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"2\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Journal of Magnetic Resonance Open\",\"FirstCategoryId\":\"1\",\"ListUrlMain\":\"https://www.sciencedirect.com/science/article/pii/S266644102200053X\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"\",\"JCRName\":\"\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of Magnetic Resonance Open","FirstCategoryId":"1","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S266644102200053X","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 2

摘要

一维核磁共振光谱的连续采集出现在许多情况下,例如在变温研究或反应监测中。在传统方法中,对光谱进行单独处理,并在每个光谱中进行标准的拾峰。然而,当光谱之间的化学位移线性变化时,Radon变换(RT)比传统的数据处理更有效,因为它提供了灵敏度和分辨率增益。RT产生二维(2D)频谱,其中一维对应于共振频率,另一维对应于其变化率。然而,二维红外光谱中的线形并不是二维洛伦兹,现有的光谱选峰器不能有效地处理它们。针对这一问题,我们提出了一种基于U-Net神经网络的二维RT光谱选峰器。该软件包含一个用户友好的图形界面。我们在三个具有挑战性的串行数据集上对该程序进行了测试,以证明该程序对峰值重叠、复杂多路结构和低信噪比的鲁棒性。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

摘要图片

查看原文
分享 分享
微信好友 朋友圈 QQ好友 复制链接
本刊更多论文
Radon peak-picker based on a neural network

Serial acquisition of one-dimensional NMR spectra appears in many contexts, e.g. in variable-temperature studies or reaction monitoring. In a conventional approach, the spectra are processed separately, and standard peak-picking is performed in each of them. Yet, when chemical shifts change linearly between spectra, the Radon transform (RT) is more effective than conventional data processing, since it provides sensitivity and resolution gains. RT results in a two-dimensional (2D) spectrum with one dimension corresponding to resonance frequencies and the other to their rates of change. However, the lineshapes in 2D RT spectra are not 2D lorentzians, and thus available spectral peak-pickers cannot effectively deal with them. We propose a solution to this problem — a peak-picker dedicated to 2D RT spectra and based on a U-Net neural network. The software contains a user-friendly graphical interface. We test the program on three challenging serial data sets to demonstrate the robustness to peak overlap, complex multiplet structures and low signal-to-noise ratio.

求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
CiteScore
1.90
自引率
0.00%
发文量
0
期刊最新文献
Creating high, portable proton polarization with photo-excited triplet DNP Understanding magnetic fields, for NMR/MRI Fast quantitative MRI: Spiral Acquisition Matching-Based Algorithm (SAMBA) for Robust T1 and T2 Mapping Automated hyperpolarized 129Xe gas generator for nuclear magnetic resonance spectroscopy and imaging applications A comprehensive solid-state NMR and theoretical modeling study to reveal the structural evolution of layered yttrium hydroxide upon calcination
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
已复制链接
已复制链接
快去分享给好友吧!
我知道了
×
扫码分享
扫码分享
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1