描述酶反应稳态方程的计算机程序。

R Varon, F Garcia-Sevilla, M Garcia-Moreno, F Garcia-Canovas, R Peyro, R G Duggleby
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引用次数: 22

摘要

动机:在酶动力学研究中,经常需要推导稳态方程。如果手工完成,这将变得乏味且容易出现人为错误。目前可用的能够接受某种复杂反应机制的计算机程序只集中在严格的稳态方法上。结果:在这里,我们提出了一个称为REFERASS的计算机程序,具有较短的计算时间和用户友好的输入和输出文件格式,能够推导出严格的稳态方程和/或与通常假设相对应的方程,即一个或多个可逆步骤处于快速平衡状态。该程序处理酶催化反应的机制涉及多达255种酶,通过多达255个反应步骤连接,受限于可用的内存和磁盘空间。
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Computer program for the equations describing the steady state of enzyme reactions.

Motivation: The derivation of steady-state equations is frequently carried out in enzyme kinetic studies. Done manually, this becomes tedious and prone to human error. The computer programs now available which are able to accept reaction mechanisms of some complexity are focused only on the strict steady-state approach.

Results: Here we present a computer program called REFERASS, with a short computation time and a user-friendly format for the input and output files, able to derive the strict steady-state equations and/or those corresponding to the usual assumption that one ore more of the reversible steps are in rapid equilibrium. This program handles enzyme-catalysed reactions with mechanisms involving up to 255 enzyme species connected by up to 255 reaction steps, subject to limits imposed by the memory and disk space available.

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A genetic algorithm for multiple molecular sequence alignment. Displaying the information contents of structural RNA alignments: the structure logos. Q-RT-PCR: data analysis software for measurement of gene expression by competitive RT-PCR. SS3D-P2: a three dimensional substructure search program for protein motifs based on secondary structure elements. XDOM, a graphical tool to analyse domain arrangements in any set of protein sequences.
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