全蛋白质组氨基酸组成与静态DNA曲率的关系。

R Jáuregui, F Bolivar, E Merino
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引用次数: 6

摘要

为了研究生物体的基因组DNA曲率与其蛋白质组的氨基酸组成之间的可能关系,利用大肠杆菌密码子偏好对完全确定的基因组中的每个肽序列进行反翻译,并计算和比较所得DNA序列的曲率曲线。观察到这两个变量之间存在明显的相互依赖性,因为每个逆转录蛋白质组呈现出独特的,统计上显着的DNA曲率谱偏向于其自然DNA曲率谱。此外,通过比较真实和随机排列的蛋白质组所产生的谱,我们还发现了肽序列对DNA曲率的位置依赖性贡献。这些结果的含义支持了可能选择基因组特定全局曲率的想法。
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Relationship between whole proteome aminoacid composition and static DNA curvature.

To study possible relationships between an organism's genomic DNA curvature and the aminoacid composition of its proteome, every peptidic sequence from fully determined genomes was retrotranslated using the E. coli codon preferences, and the curvature profiles of the resulting DNA sequences were calculated and compared. A clear interdependence between these two variables was observed, as each retrotranslated proteome presented a distinctive, statistically significant DNA curvature profile biased toward its natural DNA curvature profile. In addition, by comparing the profiles arising from real and randomly permuted proteomes, we also found a position-dependent contribution of the peptidic sequence to DNA curvature. The implications of these results support the idea of a possible selection toward a specific global curvature of genomes.

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