卤代醇脱卤酶HheD2热稳定性的分子决定因素研究。

IF 5.5 2区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY FEBS Journal Pub Date : 2021-08-01 Epub Date: 2021-03-24 DOI:10.1111/febs.15777
Julia Wessel, Giovanna Petrillo, Miquel Estevez-Gay, Sandra Bosch, Margarita Seeger, Willem P Dijkman, Javier Iglesias-Fernández, Aurelio Hidalgo, Isabel Uson, Sílvia Osuna, Anett Schallmey
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引用次数: 2

摘要

卤代醇脱卤酶具有与多种阴离子亲核试剂混溶环氧开环的活性,在生物催化领域具有广阔的应用前景。到目前为止,已经报道了7种不同的HHDH亚型A至G,其中亚型D含有的酶数量最多。此外,据报道,D亚型的几个特征成员显示出诸如高催化活性,宽底物光谱或显着的热稳定性等突出特征。然而,到目前为止,还没有关于d型HHDH结构的报道,可以用来在分子水平上研究和理解这些特征。因此,我们以1.6 Å的分辨率解析了γ变形菌HTCC2207中HheD2的晶体结构,并将其作为靶向诱变的起点,结合分子动力学(MD)模拟,研究了与其他d亚型成员相比,HheD2的热稳定性较低的原因。结果表明,在保守残基Q160和D198之间存在氢键,与该酶的高催化活性有关。此外,还发现含有两个α-螺旋的柔性表面区域会影响HheD2的热稳定性。用HheD3的残留物交换该表面区域,得到了熔化温度高10°C的变体和最佳反应温度。总的来说,我们的研究结果为了解HheD2的结构-功能关系以及其他d型hhdh提供了重要的见解。数据库:结构数据可在PDB数据库中获得,登录号为7B73。
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Insights into the molecular determinants of thermal stability in halohydrin dehalogenase HheD2.

Halohydrin dehalogenases (HHDHs) are promising enzymes for application in biocatalysis due to their promiscuous epoxide ring-opening activity with various anionic nucleophiles. So far, seven different HHDH subtypes A to G have been reported with subtype D containing the by far largest number of enzymes. Moreover, several characterized members of subtype D have been reported to display outstanding characteristics such as high catalytic activity, broad substrate spectra or remarkable thermal stability. Yet, no structure of a D-type HHDH has been reported to date that could be used to investigate and understand those features on a molecular level. We therefore solved the crystal structure of HheD2 from gamma proteobacterium HTCC2207 at 1.6 Å resolution and used it as a starting point for targeted mutagenesis in combination with molecular dynamics (MD) simulation, in order to study the low thermal stability of HheD2 in comparison with other members of subtype D. This revealed a hydrogen bond between conserved residues Q160 and D198 to be connected with a high catalytic activity of this enzyme. Moreover, a flexible surface region containing two α-helices was identified to impact thermal stability of HheD2. Exchange of this surface region by residues of HheD3 yielded a variant with 10 °C higher melting temperature and reaction temperature optimum. Overall, our results provide important insights into the structure-function relationship of HheD2 and presumably for other D-type HHDHs. DATABASES: Structural data are available in PDB database under the accession number 7B73.

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来源期刊
FEBS Journal
FEBS Journal 生物-生化与分子生物学
CiteScore
11.70
自引率
1.90%
发文量
375
审稿时长
1 months
期刊介绍: The FEBS Journal is an international journal devoted to the rapid publication of full-length papers covering a wide range of topics in any area of the molecular life sciences. The criteria for acceptance are originality and high quality research, which will provide novel perspectives in a specific area of research, and will be of interest to our broad readership. The journal does not accept papers that describe the expression of specific genes and proteins or test the effect of a drug or reagent, without presenting any biological significance. Papers describing bioinformatics, modelling or structural studies of specific systems or molecules should include experimental data.
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