Yuchen Fei, Fengyu Zhang, Chen Zu, Mei Hong, Xingchen Peng, Jianghong Xiao, Xi Wu, Jiliu Zhou, Yan Wang
{"title":"MRF-RFS:一种改进的随机森林递归特征选择算法用于鼻咽癌分割。","authors":"Yuchen Fei, Fengyu Zhang, Chen Zu, Mei Hong, Xingchen Peng, Jianghong Xiao, Xi Wu, Jiliu Zhou, Yan Wang","doi":"10.1055/s-0040-1721791","DOIUrl":null,"url":null,"abstract":"<p><strong>Background: </strong>An accurate and reproducible method to delineate tumor margins is of great importance in clinical diagnosis and treatment. In nasopharyngeal carcinoma (NPC), due to limitations such as high variability, low contrast, and discontinuous boundaries in presenting soft tissues, tumor margin can be extremely difficult to identify in magnetic resonance imaging (MRI), increasing the challenge of NPC segmentation task.</p><p><strong>Objectives: </strong>The purpose of this work is to develop a semiautomatic algorithm for NPC image segmentation with minimal human intervention, while it is also capable of delineating tumor margins with high accuracy and reproducibility.</p><p><strong>Methods: </strong>In this paper, we propose a novel feature selection algorithm for the identification of the margin of NPC image, named as modified random forest recursive feature selection (MRF-RFS). Specifically, to obtain a more discriminative feature subset for segmentation, a modified recursive feature selection method is applied to the original handcrafted feature set. Moreover, we combine the proposed feature selection method with the classical random forest (RF) in the training stage to take full advantage of its intrinsic property (i.e., feature importance measure).</p><p><strong>Results: </strong>To evaluate the segmentation performance, we verify our method on the T1-weighted MRI images of 18 NPC patients. The experimental results demonstrate that the proposed MRF-RFS method outperforms the baseline methods and deep learning methods on the task of segmenting NPC images.</p><p><strong>Conclusion: </strong>The proposed method could be effective in NPC diagnosis and useful for guiding radiation therapy.</p>","PeriodicalId":49822,"journal":{"name":"Methods of Information in Medicine","volume":"59 4-05","pages":"151-161"},"PeriodicalIF":1.3000,"publicationDate":"2020-08-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1055/s-0040-1721791","citationCount":"1","resultStr":"{\"title\":\"MRF-RFS: A Modified Random Forest Recursive Feature Selection Algorithm for Nasopharyngeal Carcinoma Segmentation.\",\"authors\":\"Yuchen Fei, Fengyu Zhang, Chen Zu, Mei Hong, Xingchen Peng, Jianghong Xiao, Xi Wu, Jiliu Zhou, Yan Wang\",\"doi\":\"10.1055/s-0040-1721791\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><strong>Background: </strong>An accurate and reproducible method to delineate tumor margins is of great importance in clinical diagnosis and treatment. In nasopharyngeal carcinoma (NPC), due to limitations such as high variability, low contrast, and discontinuous boundaries in presenting soft tissues, tumor margin can be extremely difficult to identify in magnetic resonance imaging (MRI), increasing the challenge of NPC segmentation task.</p><p><strong>Objectives: </strong>The purpose of this work is to develop a semiautomatic algorithm for NPC image segmentation with minimal human intervention, while it is also capable of delineating tumor margins with high accuracy and reproducibility.</p><p><strong>Methods: </strong>In this paper, we propose a novel feature selection algorithm for the identification of the margin of NPC image, named as modified random forest recursive feature selection (MRF-RFS). Specifically, to obtain a more discriminative feature subset for segmentation, a modified recursive feature selection method is applied to the original handcrafted feature set. Moreover, we combine the proposed feature selection method with the classical random forest (RF) in the training stage to take full advantage of its intrinsic property (i.e., feature importance measure).</p><p><strong>Results: </strong>To evaluate the segmentation performance, we verify our method on the T1-weighted MRI images of 18 NPC patients. The experimental results demonstrate that the proposed MRF-RFS method outperforms the baseline methods and deep learning methods on the task of segmenting NPC images.</p><p><strong>Conclusion: </strong>The proposed method could be effective in NPC diagnosis and useful for guiding radiation therapy.</p>\",\"PeriodicalId\":49822,\"journal\":{\"name\":\"Methods of Information in Medicine\",\"volume\":\"59 4-05\",\"pages\":\"151-161\"},\"PeriodicalIF\":1.3000,\"publicationDate\":\"2020-08-01\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://sci-hub-pdf.com/10.1055/s-0040-1721791\",\"citationCount\":\"1\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Methods of Information in Medicine\",\"FirstCategoryId\":\"3\",\"ListUrlMain\":\"https://doi.org/10.1055/s-0040-1721791\",\"RegionNum\":4,\"RegionCategory\":\"医学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"2021/2/22 0:00:00\",\"PubModel\":\"Epub\",\"JCR\":\"Q3\",\"JCRName\":\"COMPUTER SCIENCE, INFORMATION SYSTEMS\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Methods of Information in Medicine","FirstCategoryId":"3","ListUrlMain":"https://doi.org/10.1055/s-0040-1721791","RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2021/2/22 0:00:00","PubModel":"Epub","JCR":"Q3","JCRName":"COMPUTER SCIENCE, INFORMATION SYSTEMS","Score":null,"Total":0}
MRF-RFS: A Modified Random Forest Recursive Feature Selection Algorithm for Nasopharyngeal Carcinoma Segmentation.
Background: An accurate and reproducible method to delineate tumor margins is of great importance in clinical diagnosis and treatment. In nasopharyngeal carcinoma (NPC), due to limitations such as high variability, low contrast, and discontinuous boundaries in presenting soft tissues, tumor margin can be extremely difficult to identify in magnetic resonance imaging (MRI), increasing the challenge of NPC segmentation task.
Objectives: The purpose of this work is to develop a semiautomatic algorithm for NPC image segmentation with minimal human intervention, while it is also capable of delineating tumor margins with high accuracy and reproducibility.
Methods: In this paper, we propose a novel feature selection algorithm for the identification of the margin of NPC image, named as modified random forest recursive feature selection (MRF-RFS). Specifically, to obtain a more discriminative feature subset for segmentation, a modified recursive feature selection method is applied to the original handcrafted feature set. Moreover, we combine the proposed feature selection method with the classical random forest (RF) in the training stage to take full advantage of its intrinsic property (i.e., feature importance measure).
Results: To evaluate the segmentation performance, we verify our method on the T1-weighted MRI images of 18 NPC patients. The experimental results demonstrate that the proposed MRF-RFS method outperforms the baseline methods and deep learning methods on the task of segmenting NPC images.
Conclusion: The proposed method could be effective in NPC diagnosis and useful for guiding radiation therapy.
期刊介绍:
Good medicine and good healthcare demand good information. Since the journal''s founding in 1962, Methods of Information in Medicine has stressed the methodology and scientific fundamentals of organizing, representing and analyzing data, information and knowledge in biomedicine and health care. Covering publications in the fields of biomedical and health informatics, medical biometry, and epidemiology, the journal publishes original papers, reviews, reports, opinion papers, editorials, and letters to the editor. From time to time, the journal publishes articles on particular focus themes as part of a journal''s issue.