{"title":"带电荷底物的扩散控制酶促反应动力学。","authors":"Benzhuo Lu, J Andrew McCammon","doi":"10.1186/1757-5036-3-1","DOIUrl":null,"url":null,"abstract":"<p><p>The Debye-Hückel limiting law (DHL) has often been used to estimate rate constants of diffusion-controlled reactions under different ionic strengths. Two main approximations are adopted in DHL: one is that the solution of the linearized Poisson-Boltzmann equation for a spherical cavity is used to estimate the excess electrostatic free energy of a solution; the other is that details of electrostatic interactions of the solutes are neglected. This makes DHL applicable only at low ionic strengths and dilute solutions (very low substrate/solute concentrations). We show in this work that through numerical solution of the Poisson-Nernst-Planck equations, diffusion-reaction processes can be studied at a variety of conditions including realistically concentrated solutions, high ionic strength, and certainly with non-equilibrium charge distributions. Reaction rate coefficients for the acetylcholine-acetylcholinesterase system are predicted to strongly depend on both ionic strength and substrate concentration. In particular, they increase considerably with increase of substrate concentrations at a fixed ionic strength, which is open to experimental testing. This phenomenon is also verified on a simple model, and is expected to be general for electrostatically attracting enzyme-substrate systems.PACS Codes: 82.45.Tv, 87.15.VvMSC Codes: 92C30.</p>","PeriodicalId":88297,"journal":{"name":"PMC biophysics","volume":"3 ","pages":"1"},"PeriodicalIF":0.0000,"publicationDate":"2010-01-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1186/1757-5036-3-1","citationCount":"23","resultStr":"{\"title\":\"Kinetics of diffusion-controlled enzymatic reactions with charged substrates.\",\"authors\":\"Benzhuo Lu, J Andrew McCammon\",\"doi\":\"10.1186/1757-5036-3-1\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>The Debye-Hückel limiting law (DHL) has often been used to estimate rate constants of diffusion-controlled reactions under different ionic strengths. Two main approximations are adopted in DHL: one is that the solution of the linearized Poisson-Boltzmann equation for a spherical cavity is used to estimate the excess electrostatic free energy of a solution; the other is that details of electrostatic interactions of the solutes are neglected. This makes DHL applicable only at low ionic strengths and dilute solutions (very low substrate/solute concentrations). We show in this work that through numerical solution of the Poisson-Nernst-Planck equations, diffusion-reaction processes can be studied at a variety of conditions including realistically concentrated solutions, high ionic strength, and certainly with non-equilibrium charge distributions. Reaction rate coefficients for the acetylcholine-acetylcholinesterase system are predicted to strongly depend on both ionic strength and substrate concentration. In particular, they increase considerably with increase of substrate concentrations at a fixed ionic strength, which is open to experimental testing. This phenomenon is also verified on a simple model, and is expected to be general for electrostatically attracting enzyme-substrate systems.PACS Codes: 82.45.Tv, 87.15.VvMSC Codes: 92C30.</p>\",\"PeriodicalId\":88297,\"journal\":{\"name\":\"PMC biophysics\",\"volume\":\"3 \",\"pages\":\"1\"},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2010-01-18\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://sci-hub-pdf.com/10.1186/1757-5036-3-1\",\"citationCount\":\"23\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"PMC biophysics\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/10.1186/1757-5036-3-1\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"\",\"JCRName\":\"\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"PMC biophysics","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.1186/1757-5036-3-1","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 23
摘要
debye - h ckel极限定律(DHL)常被用来估计不同离子强度下扩散控制反应的速率常数。DHL主要采用两种近似方法:一是利用球腔线性化泊松-玻尔兹曼方程的解来估计解的多余静电自由能;二是忽略了溶质静电相互作用的细节。这使得DHL仅适用于低离子强度和稀溶液(非常低的底物/溶质浓度)。我们在这项工作中表明,通过泊松-能斯特-普朗克方程的数值解,可以在各种条件下研究扩散反应过程,包括实际浓溶液,高离子强度,当然还有非平衡电荷分布。预测乙酰胆碱-乙酰胆碱酯酶体系的反应速率系数强烈依赖于离子强度和底物浓度。特别是,在固定离子强度下,它们随着底物浓度的增加而显著增加,这有待于实验测试。这一现象也在一个简单的模型上得到了验证,并有望在静电吸引酶-底物系统中得到普遍应用。PACS代码:82.45。电视,87.15。VvMSC代码:92C30。
Kinetics of diffusion-controlled enzymatic reactions with charged substrates.
The Debye-Hückel limiting law (DHL) has often been used to estimate rate constants of diffusion-controlled reactions under different ionic strengths. Two main approximations are adopted in DHL: one is that the solution of the linearized Poisson-Boltzmann equation for a spherical cavity is used to estimate the excess electrostatic free energy of a solution; the other is that details of electrostatic interactions of the solutes are neglected. This makes DHL applicable only at low ionic strengths and dilute solutions (very low substrate/solute concentrations). We show in this work that through numerical solution of the Poisson-Nernst-Planck equations, diffusion-reaction processes can be studied at a variety of conditions including realistically concentrated solutions, high ionic strength, and certainly with non-equilibrium charge distributions. Reaction rate coefficients for the acetylcholine-acetylcholinesterase system are predicted to strongly depend on both ionic strength and substrate concentration. In particular, they increase considerably with increase of substrate concentrations at a fixed ionic strength, which is open to experimental testing. This phenomenon is also verified on a simple model, and is expected to be general for electrostatically attracting enzyme-substrate systems.PACS Codes: 82.45.Tv, 87.15.VvMSC Codes: 92C30.