带电荷底物的扩散控制酶促反应动力学。

Benzhuo Lu, J Andrew McCammon
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引用次数: 23

摘要

debye - h ckel极限定律(DHL)常被用来估计不同离子强度下扩散控制反应的速率常数。DHL主要采用两种近似方法:一是利用球腔线性化泊松-玻尔兹曼方程的解来估计解的多余静电自由能;二是忽略了溶质静电相互作用的细节。这使得DHL仅适用于低离子强度和稀溶液(非常低的底物/溶质浓度)。我们在这项工作中表明,通过泊松-能斯特-普朗克方程的数值解,可以在各种条件下研究扩散反应过程,包括实际浓溶液,高离子强度,当然还有非平衡电荷分布。预测乙酰胆碱-乙酰胆碱酯酶体系的反应速率系数强烈依赖于离子强度和底物浓度。特别是,在固定离子强度下,它们随着底物浓度的增加而显著增加,这有待于实验测试。这一现象也在一个简单的模型上得到了验证,并有望在静电吸引酶-底物系统中得到普遍应用。PACS代码:82.45。电视,87.15。VvMSC代码:92C30。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

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Kinetics of diffusion-controlled enzymatic reactions with charged substrates.

The Debye-Hückel limiting law (DHL) has often been used to estimate rate constants of diffusion-controlled reactions under different ionic strengths. Two main approximations are adopted in DHL: one is that the solution of the linearized Poisson-Boltzmann equation for a spherical cavity is used to estimate the excess electrostatic free energy of a solution; the other is that details of electrostatic interactions of the solutes are neglected. This makes DHL applicable only at low ionic strengths and dilute solutions (very low substrate/solute concentrations). We show in this work that through numerical solution of the Poisson-Nernst-Planck equations, diffusion-reaction processes can be studied at a variety of conditions including realistically concentrated solutions, high ionic strength, and certainly with non-equilibrium charge distributions. Reaction rate coefficients for the acetylcholine-acetylcholinesterase system are predicted to strongly depend on both ionic strength and substrate concentration. In particular, they increase considerably with increase of substrate concentrations at a fixed ionic strength, which is open to experimental testing. This phenomenon is also verified on a simple model, and is expected to be general for electrostatically attracting enzyme-substrate systems.PACS Codes: 82.45.Tv, 87.15.VvMSC Codes: 92C30.

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