5-氟胞嘧啶的共晶。具有固定氢键位点的构象。

IF 1.9 3区 化学 Acta Crystallographica Section B-structural Science Pub Date : 2012-08-01 Epub Date: 2012-07-17 DOI:10.1107/S010876811202561X
Maya Tutughamiarso, Guido Wagner, Ernst Egert
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引用次数: 25

摘要

抗真菌药物5-氟胞嘧啶(4-氨基-5-氟-1,2-二氢嘧啶-2- 1)与5个互补化合物共结晶,以便更好地了解其药物受体相互作用。前两种化合物,2-氨基嘧啶(2-氨基-1,3-嘧啶)和n -乙酰肌酸酐(n -乙酰-2-氨基-1-甲基- 5h -咪唑-4-酮),显示出与5-氟胞嘧啶形成R(2)(2)(8)异二聚体的供体-受体位点。在与2-氨基嘧啶(I)的共晶中观察到这种异二聚体;相反,5-氟胞嘧啶和n-乙酰肌酸酐[在其晶体结构(II)中形成同型二聚体]在(III)中仅通过单键连接。其他三个化合物6-氨基尿嘧啶(6-氨基-2,4-嘧啶二醇)、6-氨基异胞嘧啶(2,6-二氨基- 3h -嘧啶-4- 1)和无环鸟苷[无环鸟苷或2-氨基-9-[(2-羟基乙氧基)甲基]-1,9-二氢- 6h -嘌呤-6- 1]具有供体-供体-受体位点;因此,它们可以与5-氟胞嘧啶相互作用,形成由三个氢键连接的异源二聚体。在与6-氨基异胞嘧啶(Va)-(Vd)的共晶中,以及与抗病毒药物阿昔洛韦(VII)的共晶中,观察到所需的异二聚体。然而,它们不是在与6-氨基尿嘧啶(IV)的共晶中形成的,其中组分由两个氢键连接。此外,还获得了无溶剂结构的阿昔洛韦(VI)。对二聚体形成过程中释放的计算能量的比较有助于使各种共晶结构中对氢键相互作用的偏好合理化。
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Cocrystals of 5-fluorocytosine. I. Coformers with fixed hydrogen-bonding sites.

The antifungal drug 5-fluorocytosine (4-amino-5-fluoro-1,2-dihydropyrimidin-2-one) was cocrystallized with five complementary compounds in order to better understand its drug-receptor interaction. The first two compounds, 2-aminopyrimidine (2-amino-1,3-diazine) and N-acetylcreatinine (N-acetyl-2-amino-1-methyl-5H-imidazol-4-one), exhibit donor-acceptor sites for R(2)(2)(8) heterodimer formation with 5-fluorocytosine. Such a heterodimer is observed in the cocrystal with 2-aminopyrimidine (I); in contrast, 5-fluorocytosine and N-acetylcreatinine [which forms homodimers in its crystal structure (II)] are connected only by a single hydrogen bond in (III). The other three compounds 6-aminouracil (6-amino-2,4-pyrimidinediol), 6-aminoisocytosine (2,6-diamino-3H-pyrimidin-4-one) and acyclovir [acycloguanosine or 2-amino-9-[(2-hydroxyethoxy)methyl]-1,9-dihydro-6H-purin-6-one] possess donor-donor-acceptor sites; therefore, they can interact with 5-fluorocytosine to form a heterodimer linked by three hydrogen bonds. In the cocrystals with 6-aminoisocytosine (Va)-(Vd), as well as in the cocrystal with the antiviral drug acyclovir (VII), the desired heterodimers are observed. However, they are not formed in the cocrystal with 6-aminouracil (IV), where the components are connected by two hydrogen bonds. In addition, a solvent-free structure of acyclovir (VI) was obtained. A comparison of the calculated energies released during dimer formation helped to rationalize the preference for hydrogen-bonding interactions in the various cocrystal structures.

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期刊介绍: Acta Crystallographica Section B: Structural Science, Crystal Engineering and Materials publishes scientific articles related to the structural science of compounds and materials in the widest sense. Knowledge of the arrangements of atoms, including their temporal variations and dependencies on temperature and pressure, is often the key to understanding physical and chemical phenomena and is crucial for the design of new materials and supramolecular devices. Acta Crystallographica B is the forum for the publication of such contributions. Scientific developments based on experimental studies as well as those based on theoretical approaches, including crystal-structure prediction, structure-property relations and the use of databases of crystal structures, are published.
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