气单胞菌噬菌体为其过度使用的密码子编码trna。

Q4 Pharmacology, Toxicology and Pharmaceutics International Journal of Computational Biology and Drug Design Pub Date : 2014-01-01 Epub Date: 2014-05-28 DOI:10.1504/IJCBDD.2014.061645
Ramanandan Prabhakaran, Shivapriya Chithambaram, Xuhua Xia
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引用次数: 19

摘要

富气相色谱的沙门氏气单胞菌既可被富气相色谱噬菌体(气单胞菌噬菌体- phiAS7和vB_AsaM-56)寄生,也可被贫气相色谱噬菌体(气单胞菌噬菌体- 25、31、44RR2.8t、65、Aes508、phiAS4和phiAS5)寄生。富气相色谱气单胞菌噬菌体phiAS7和气单胞菌噬菌体vB_AsaM-56的密码子使用偏向性与宿主几乎相同。而其余七种gc -贫气单胞菌噬菌体的密码子使用与富含gc的宿主有显著差异。在这里,我们研究了气单胞菌噬菌体基因组中编码的tRNA是否促进了噬菌体蛋白的翻译。我们发现在噬菌体基因组中编码的trna与噬菌体基因中过度使用的同义密码子相对应,而在宿主基因中则不对应。
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Aeromonas phages encode tRNAs for their overused codons.

The GC-rich bacterial species, Aeromonas salmonicida, is parasitised by both GC-rich phages (Aeromonas phages - phiAS7 and vB_AsaM-56) and GC-poor phages (Aeromonas phages - 25, 31, 44RR2.8t, 65, Aes508, phiAS4 and phiAS5). Both the GC-rich Aeromonas phage phiAS7 and Aeromonas phage vB_AsaM-56 have nearly identical codon usage bias as their host. While all the remaining seven GC-poor Aeromonas phages differ dramatically in codon usage from their GC-rich host. Here, we investigated whether tRNA encoded in the genome of Aeromonas phages facilitate the translation of phage proteins. We found that tRNAs encoded in the phage genome correspond to synonymous codons overused in the phage genes but not in the host genes.

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来源期刊
International Journal of Computational Biology and Drug Design
International Journal of Computational Biology and Drug Design Pharmacology, Toxicology and Pharmaceutics-Drug Discovery
CiteScore
1.00
自引率
0.00%
发文量
8
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