Iman Maghami , Ashley Van Beusekom , Lauren Hay , Zhiyu Li , Andrew Bennett , YoungDon Choi , Bart Nijssen , Shaowen Wang , David Tarboton , Jonathan L. Goodall
{"title":"为复杂水文模型研究的重用和再现性建立网络基础设施","authors":"Iman Maghami , Ashley Van Beusekom , Lauren Hay , Zhiyu Li , Andrew Bennett , YoungDon Choi , Bart Nijssen , Shaowen Wang , David Tarboton , Jonathan L. Goodall","doi":"10.1016/j.envsoft.2023.105689","DOIUrl":null,"url":null,"abstract":"<div><p><span>Building cyberinfrastructure<span><span> for the reuse and reproducibility of large-scale hydrologic modeling studies requires overcoming a number of data management and software architecture challenges. The objective of this research is to advance the cyberinfrastructure needed to overcome some of these challenges to make such computational hydrologic studies easier to reuse and reproduce. We present novel cyberinfrastructure capable of integrating HydroShare (an online data repository), CyberGIS-Jupyter for Water and </span>high performance computing (HPC) resources (computational environments), and the Structure for Unifying Multiple Modeling Alternatives (SUMMA) hydrologic modeling framework through its </span></span>application programming interface<span> for orchestrating model runs. The cyberinfrastructure is demonstrated for a complex computational modeling<span> study on a contiguous United States dataset. We present and discuss key capabilities of the cyberinfrastructure including (1) containerization for portability across compute environments, (2) Globus for large data transfers, (3) a Jupyter gateway to HPC environments, and (4) Jupyter notebooks for capturing the modeling workflows.</span></span></p></div>","PeriodicalId":310,"journal":{"name":"Environmental Modelling & Software","volume":"164 ","pages":"Article 105689"},"PeriodicalIF":4.8000,"publicationDate":"2023-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"3","resultStr":"{\"title\":\"Building cyberinfrastructure for the reuse and reproducibility of complex hydrologic modeling studies\",\"authors\":\"Iman Maghami , Ashley Van Beusekom , Lauren Hay , Zhiyu Li , Andrew Bennett , YoungDon Choi , Bart Nijssen , Shaowen Wang , David Tarboton , Jonathan L. Goodall\",\"doi\":\"10.1016/j.envsoft.2023.105689\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><p><span>Building cyberinfrastructure<span><span> for the reuse and reproducibility of large-scale hydrologic modeling studies requires overcoming a number of data management and software architecture challenges. The objective of this research is to advance the cyberinfrastructure needed to overcome some of these challenges to make such computational hydrologic studies easier to reuse and reproduce. We present novel cyberinfrastructure capable of integrating HydroShare (an online data repository), CyberGIS-Jupyter for Water and </span>high performance computing (HPC) resources (computational environments), and the Structure for Unifying Multiple Modeling Alternatives (SUMMA) hydrologic modeling framework through its </span></span>application programming interface<span> for orchestrating model runs. The cyberinfrastructure is demonstrated for a complex computational modeling<span> study on a contiguous United States dataset. We present and discuss key capabilities of the cyberinfrastructure including (1) containerization for portability across compute environments, (2) Globus for large data transfers, (3) a Jupyter gateway to HPC environments, and (4) Jupyter notebooks for capturing the modeling workflows.</span></span></p></div>\",\"PeriodicalId\":310,\"journal\":{\"name\":\"Environmental Modelling & Software\",\"volume\":\"164 \",\"pages\":\"Article 105689\"},\"PeriodicalIF\":4.8000,\"publicationDate\":\"2023-06-01\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"3\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Environmental Modelling & Software\",\"FirstCategoryId\":\"93\",\"ListUrlMain\":\"https://www.sciencedirect.com/science/article/pii/S1364815223000750\",\"RegionNum\":2,\"RegionCategory\":\"环境科学与生态学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q1\",\"JCRName\":\"COMPUTER SCIENCE, INTERDISCIPLINARY APPLICATIONS\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Environmental Modelling & Software","FirstCategoryId":"93","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S1364815223000750","RegionNum":2,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"COMPUTER SCIENCE, INTERDISCIPLINARY APPLICATIONS","Score":null,"Total":0}
Building cyberinfrastructure for the reuse and reproducibility of complex hydrologic modeling studies
Building cyberinfrastructure for the reuse and reproducibility of large-scale hydrologic modeling studies requires overcoming a number of data management and software architecture challenges. The objective of this research is to advance the cyberinfrastructure needed to overcome some of these challenges to make such computational hydrologic studies easier to reuse and reproduce. We present novel cyberinfrastructure capable of integrating HydroShare (an online data repository), CyberGIS-Jupyter for Water and high performance computing (HPC) resources (computational environments), and the Structure for Unifying Multiple Modeling Alternatives (SUMMA) hydrologic modeling framework through its application programming interface for orchestrating model runs. The cyberinfrastructure is demonstrated for a complex computational modeling study on a contiguous United States dataset. We present and discuss key capabilities of the cyberinfrastructure including (1) containerization for portability across compute environments, (2) Globus for large data transfers, (3) a Jupyter gateway to HPC environments, and (4) Jupyter notebooks for capturing the modeling workflows.
期刊介绍:
Environmental Modelling & Software publishes contributions, in the form of research articles, reviews and short communications, on recent advances in environmental modelling and/or software. The aim is to improve our capacity to represent, understand, predict or manage the behaviour of environmental systems at all practical scales, and to communicate those improvements to a wide scientific and professional audience.