开发一种从微阵列数据中检测癌症基因的新方法。

Shreya Mathur, Sunil Mathur
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引用次数: 0

摘要

DNA微阵列技术可以同时筛选数千种基因表达谱,改变遗传学在医学中的应用方式。然而,微阵列数据缺乏正态性使得常用的统计方法无效。我们提出了一种新的统计方法,它不需要严格的假设,但仍然比一些竞争对手更强大。通过模拟研究和临床数据,我们表明我们的新方法优于以前的方法。在零假设和备择假设下,得到了所提出检验的极限分布。拟议中的测试将有助于癌症治疗和基因治疗更加成功,并可能促进有关癌症疫苗的研究。提出的测试也可能有助于在基于差异表达基因子集和临床数据的遗传谱研究中建立预测模型,以评估临床预测的准确性。
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Developing a novel test to detect cancer genes from microarray data.

DNA microarray technology can simultaneously screen thousands of gene expression profiles, transforming how genetics is applied in medicine. However, the lack of normality in microarray data renders common statistical methods ineffective. We propose a novel statistical method which does not require stringent assumptions but is still more powerful than some of its competitors. Using both simulation studies and clinical data, we show that our novel method outperforms previous methods. The limiting distribution for the proposed test is obtained for under null and alternative hypotheses. The proposed test will help make cancer treatment and gene therapy more successful, and it may facilitate research regarding cancer vaccinations. The proposed test may also help in the development of a prediction model in genetic profiling studies built on a subset of differentially expressed genes and the clinical data to assess the accuracy of the clinical prediction.

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来源期刊
International Journal of Bioinformatics Research and Applications
International Journal of Bioinformatics Research and Applications Health Professions-Health Information Management
CiteScore
0.60
自引率
0.00%
发文量
26
期刊介绍: Bioinformatics is an interdisciplinary research field that combines biology, computer science, mathematics and statistics into a broad-based field that will have profound impacts on all fields of biology. The emphasis of IJBRA is on basic bioinformatics research methods, tool development, performance evaluation and their applications in biology. IJBRA addresses the most innovative developments, research issues and solutions in bioinformatics and computational biology and their applications. Topics covered include Databases, bio-grid, system biology Biomedical image processing, modelling and simulation Bio-ontology and data mining, DNA assembly, clustering, mapping Computational genomics/proteomics Silico technology: computational intelligence, high performance computing E-health, telemedicine Gene expression, microarrays, identification, annotation Genetic algorithms, fuzzy logic, neural networks, data visualisation Hidden Markov models, machine learning, support vector machines Molecular evolution, phylogeny, modelling, simulation, sequence analysis Parallel algorithms/architectures, computational structural biology Phylogeny reconstruction algorithms, physiome, protein structure prediction Sequence assembly, search, alignment Signalling/computational biomedical data engineering Simulated annealing, statistical analysis, stochastic grammars.
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