{"title":"应激p53网络的同步性","authors":"Gurumayum Reenaroy Devi;Md. Jahoor Alam;R.K. Brojen Singh","doi":"10.1093/imammb/dqv002","DOIUrl":null,"url":null,"abstract":"We study transition of the temporal behaviours of \n<tex>$p53$</tex>\n and \n<tex>$MDM2$</tex>\n in a stress p53-MDM2-NO regulatory network induced by a bioactive molecule \n<tex>$NO$</tex>\n (Nitric Oxide). We further study synchronization among a group of identical stress systems arranged in a 3D array with nearest neighbour diffusive coupling. The role of \n<tex>$NO$</tex>\n and the effect of noise are investigated. In the single system study, we found three distinct types of temporal behaviour of \n<tex>$p53$</tex>\n, namely oscillation death, damped oscillation and sustained oscillation, depending on the amount of stress induced by \n<tex>$NO$</tex>\n, indicating how \n<tex>$p53$</tex>\n responds to incoming stress. The correlation among coupled systems increases as the value of the coupling constant (\n<tex>$\\epsilon$</tex>\n) is increased (\n<tex>$\\gamma$</tex>\n increases) and becomes constant after a certain value of \n<tex>$\\epsilon$</tex>\n. The permutation entropy spectra \n<tex>$H(\\epsilon )$</tex>\n for \n<tex>$p53$</tex>\n and \n<tex>$MDM2$</tex>\n as a function of \n<tex>$\\epsilon$</tex>\n are found to be different due to direct and indirect interaction of \n<tex>$NO$</tex>\n with respective proteins. We find \n<tex>$\\gamma$</tex>\n versus \n<tex>$\\epsilon$</tex>\n for \n<tex>$p53$</tex>\n and \n<tex>$MDM2$</tex>\n to be similar in a deterministic approach but different in a stochastic approach, and the separation between \n<tex>$\\gamma$</tex>\n of the respective proteins as a function of \n<tex>$\\epsilon$</tex>\n decreases as system size increases. The role of \n<tex>$NO$</tex>\n is found to be two-fold: stress induced by NO is prominent at small and large values of \n<tex>$\\epsilon$</tex>\n but synchrony induced by it dominates in the moderate range of \n<tex>$\\epsilon$</tex>\n. Excess stress induces apoptosis.","PeriodicalId":94130,"journal":{"name":"Mathematical medicine and biology : a journal of the IMA","volume":"32 4","pages":"437-456"},"PeriodicalIF":0.0000,"publicationDate":"2015-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1093/imammb/dqv002","citationCount":"4","resultStr":"{\"title\":\"Synchronization in stress p53 network\",\"authors\":\"Gurumayum Reenaroy Devi;Md. Jahoor Alam;R.K. Brojen Singh\",\"doi\":\"10.1093/imammb/dqv002\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"We study transition of the temporal behaviours of \\n<tex>$p53$</tex>\\n and \\n<tex>$MDM2$</tex>\\n in a stress p53-MDM2-NO regulatory network induced by a bioactive molecule \\n<tex>$NO$</tex>\\n (Nitric Oxide). We further study synchronization among a group of identical stress systems arranged in a 3D array with nearest neighbour diffusive coupling. The role of \\n<tex>$NO$</tex>\\n and the effect of noise are investigated. In the single system study, we found three distinct types of temporal behaviour of \\n<tex>$p53$</tex>\\n, namely oscillation death, damped oscillation and sustained oscillation, depending on the amount of stress induced by \\n<tex>$NO$</tex>\\n, indicating how \\n<tex>$p53$</tex>\\n responds to incoming stress. The correlation among coupled systems increases as the value of the coupling constant (\\n<tex>$\\\\epsilon$</tex>\\n) is increased (\\n<tex>$\\\\gamma$</tex>\\n increases) and becomes constant after a certain value of \\n<tex>$\\\\epsilon$</tex>\\n. The permutation entropy spectra \\n<tex>$H(\\\\epsilon )$</tex>\\n for \\n<tex>$p53$</tex>\\n and \\n<tex>$MDM2$</tex>\\n as a function of \\n<tex>$\\\\epsilon$</tex>\\n are found to be different due to direct and indirect interaction of \\n<tex>$NO$</tex>\\n with respective proteins. We find \\n<tex>$\\\\gamma$</tex>\\n versus \\n<tex>$\\\\epsilon$</tex>\\n for \\n<tex>$p53$</tex>\\n and \\n<tex>$MDM2$</tex>\\n to be similar in a deterministic approach but different in a stochastic approach, and the separation between \\n<tex>$\\\\gamma$</tex>\\n of the respective proteins as a function of \\n<tex>$\\\\epsilon$</tex>\\n decreases as system size increases. The role of \\n<tex>$NO$</tex>\\n is found to be two-fold: stress induced by NO is prominent at small and large values of \\n<tex>$\\\\epsilon$</tex>\\n but synchrony induced by it dominates in the moderate range of \\n<tex>$\\\\epsilon$</tex>\\n. Excess stress induces apoptosis.\",\"PeriodicalId\":94130,\"journal\":{\"name\":\"Mathematical medicine and biology : a journal of the IMA\",\"volume\":\"32 4\",\"pages\":\"437-456\"},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2015-12-01\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://sci-hub-pdf.com/10.1093/imammb/dqv002\",\"citationCount\":\"4\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Mathematical medicine and biology : a journal of the IMA\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://ieeexplore.ieee.org/document/8225160/\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"\",\"JCRName\":\"\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Mathematical medicine and biology : a journal of the IMA","FirstCategoryId":"1085","ListUrlMain":"https://ieeexplore.ieee.org/document/8225160/","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
We study transition of the temporal behaviours of
$p53$
and
$MDM2$
in a stress p53-MDM2-NO regulatory network induced by a bioactive molecule
$NO$
(Nitric Oxide). We further study synchronization among a group of identical stress systems arranged in a 3D array with nearest neighbour diffusive coupling. The role of
$NO$
and the effect of noise are investigated. In the single system study, we found three distinct types of temporal behaviour of
$p53$
, namely oscillation death, damped oscillation and sustained oscillation, depending on the amount of stress induced by
$NO$
, indicating how
$p53$
responds to incoming stress. The correlation among coupled systems increases as the value of the coupling constant (
$\epsilon$
) is increased (
$\gamma$
increases) and becomes constant after a certain value of
$\epsilon$
. The permutation entropy spectra
$H(\epsilon )$
for
$p53$
and
$MDM2$
as a function of
$\epsilon$
are found to be different due to direct and indirect interaction of
$NO$
with respective proteins. We find
$\gamma$
versus
$\epsilon$
for
$p53$
and
$MDM2$
to be similar in a deterministic approach but different in a stochastic approach, and the separation between
$\gamma$
of the respective proteins as a function of
$\epsilon$
decreases as system size increases. The role of
$NO$
is found to be two-fold: stress induced by NO is prominent at small and large values of
$\epsilon$
but synchrony induced by it dominates in the moderate range of
$\epsilon$
. Excess stress induces apoptosis.