代谢组学和偏最小二乘判别分析预测自称健康受试者心肌梗死史:临床实践的有效性和可行性

Journal of clinical bioinformatics Pub Date : 2015-03-13 eCollection Date: 2015-01-01 DOI:10.1186/s13336-015-0018-4
Nornazliya Mohamad, Rose Iszati Ismet, MohdSalleh Rofiee, Zakaria Bannur, Thomas Hennessy, Manikandan Selvaraj, Aminuddin Ahmad, FadzilahMohd Nor, ThuhairahHasrah Abdul Rahman, Kamarudzaman Md Isa, AdzroolIdzwan Ismail, Lay Kek Teh, Mohd Zaki Salleh
{"title":"代谢组学和偏最小二乘判别分析预测自称健康受试者心肌梗死史:临床实践的有效性和可行性","authors":"Nornazliya Mohamad,&nbsp;Rose Iszati Ismet,&nbsp;MohdSalleh Rofiee,&nbsp;Zakaria Bannur,&nbsp;Thomas Hennessy,&nbsp;Manikandan Selvaraj,&nbsp;Aminuddin Ahmad,&nbsp;FadzilahMohd Nor,&nbsp;ThuhairahHasrah Abdul Rahman,&nbsp;Kamarudzaman Md Isa,&nbsp;AdzroolIdzwan Ismail,&nbsp;Lay Kek Teh,&nbsp;Mohd Zaki Salleh","doi":"10.1186/s13336-015-0018-4","DOIUrl":null,"url":null,"abstract":"<p><strong>Background: </strong>The dynamics of metabolomics in establishing a prediction model using partial least square discriminant analysis have enabled better disease diagnosis; with emphasis on early detection of diseases. We attempted to translate the metabolomics model to predict the health status of the Orang Asli community whom we have little information. The metabolite expressions of the healthy vs. diseased patients (cardiovascular) were compared. A metabotype model was developed and validated using partial least square discriminant analysis (PLSDA). Cardiovascular risks of the Orang Asli were predicted and confirmed by biochemistry profiles conducted concurrently.</p><p><strong>Results: </strong>Fourteen (14) metabolites were determined as potential biomarkers for cardiovascular risks with receiver operating characteristic of more than 0.7. They include 15S-HETE (AUC = 0.997) and phosphorylcholine (AUC = 0.995). Seven Orang Asli were clustered with the patients' group and may have ongoing cardiovascular risks and problems. This is supported by biochemistry tests results that showed abnormalities in cholesterol, triglyceride, HDL and LDL levels.</p><p><strong>Conclusions: </strong>The disease prediction model based on metabolites is a useful diagnostic alternative as compared to the current single biomarker assays. The former is believed to be more cost effective since a single sample run is able to provide a more comprehensive disease profile, whilst the latter require different types of sampling tubes and blood volumes.</p>","PeriodicalId":73663,"journal":{"name":"Journal of clinical bioinformatics","volume":null,"pages":null},"PeriodicalIF":0.0000,"publicationDate":"2015-03-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1186/s13336-015-0018-4","citationCount":"14","resultStr":"{\"title\":\"Metabolomics and partial least square discriminant analysis to predict history of myocardial infarction of self-claimed healthy subjects: validity and feasibility for clinical practice.\",\"authors\":\"Nornazliya Mohamad,&nbsp;Rose Iszati Ismet,&nbsp;MohdSalleh Rofiee,&nbsp;Zakaria Bannur,&nbsp;Thomas Hennessy,&nbsp;Manikandan Selvaraj,&nbsp;Aminuddin Ahmad,&nbsp;FadzilahMohd Nor,&nbsp;ThuhairahHasrah Abdul Rahman,&nbsp;Kamarudzaman Md Isa,&nbsp;AdzroolIdzwan Ismail,&nbsp;Lay Kek Teh,&nbsp;Mohd Zaki Salleh\",\"doi\":\"10.1186/s13336-015-0018-4\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><strong>Background: </strong>The dynamics of metabolomics in establishing a prediction model using partial least square discriminant analysis have enabled better disease diagnosis; with emphasis on early detection of diseases. We attempted to translate the metabolomics model to predict the health status of the Orang Asli community whom we have little information. The metabolite expressions of the healthy vs. diseased patients (cardiovascular) were compared. A metabotype model was developed and validated using partial least square discriminant analysis (PLSDA). Cardiovascular risks of the Orang Asli were predicted and confirmed by biochemistry profiles conducted concurrently.</p><p><strong>Results: </strong>Fourteen (14) metabolites were determined as potential biomarkers for cardiovascular risks with receiver operating characteristic of more than 0.7. They include 15S-HETE (AUC = 0.997) and phosphorylcholine (AUC = 0.995). Seven Orang Asli were clustered with the patients' group and may have ongoing cardiovascular risks and problems. This is supported by biochemistry tests results that showed abnormalities in cholesterol, triglyceride, HDL and LDL levels.</p><p><strong>Conclusions: </strong>The disease prediction model based on metabolites is a useful diagnostic alternative as compared to the current single biomarker assays. The former is believed to be more cost effective since a single sample run is able to provide a more comprehensive disease profile, whilst the latter require different types of sampling tubes and blood volumes.</p>\",\"PeriodicalId\":73663,\"journal\":{\"name\":\"Journal of clinical bioinformatics\",\"volume\":null,\"pages\":null},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2015-03-13\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://sci-hub-pdf.com/10.1186/s13336-015-0018-4\",\"citationCount\":\"14\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Journal of clinical bioinformatics\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/10.1186/s13336-015-0018-4\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"2015/1/1 0:00:00\",\"PubModel\":\"eCollection\",\"JCR\":\"\",\"JCRName\":\"\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of clinical bioinformatics","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.1186/s13336-015-0018-4","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2015/1/1 0:00:00","PubModel":"eCollection","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 14

摘要

背景:利用偏最小二乘判别分析建立代谢组学的动态预测模型,可以更好地进行疾病诊断;强调疾病的早期发现。我们试图翻译代谢组学模型来预测我们知之甚少的原住民社区的健康状况。比较健康和患病患者(心血管)的代谢物表达。利用偏最小二乘判别分析(PLSDA)建立了代谢型模型并进行了验证。同时进行的生物化学分析预测和证实了猩猩的心血管风险。结果:14种代谢物被确定为心血管风险的潜在生物标志物,受试者工作特征大于0.7。其中15S-HETE (AUC = 0.997)和磷酸胆碱(AUC = 0.995)。7只猩猩与患者组聚集在一起,可能有持续的心血管风险和问题。生物化学测试结果显示胆固醇、甘油三酯、高密度脂蛋白和低密度脂蛋白水平异常,这也支持了这一观点。结论:与目前的单一生物标志物分析相比,基于代谢物的疾病预测模型是一种有用的诊断选择。前者被认为更具成本效益,因为单次取样能够提供更全面的疾病概况,而后者需要不同类型的采样管和血容量。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

摘要图片

摘要图片

摘要图片

查看原文
分享 分享
微信好友 朋友圈 QQ好友 复制链接
本刊更多论文
Metabolomics and partial least square discriminant analysis to predict history of myocardial infarction of self-claimed healthy subjects: validity and feasibility for clinical practice.

Background: The dynamics of metabolomics in establishing a prediction model using partial least square discriminant analysis have enabled better disease diagnosis; with emphasis on early detection of diseases. We attempted to translate the metabolomics model to predict the health status of the Orang Asli community whom we have little information. The metabolite expressions of the healthy vs. diseased patients (cardiovascular) were compared. A metabotype model was developed and validated using partial least square discriminant analysis (PLSDA). Cardiovascular risks of the Orang Asli were predicted and confirmed by biochemistry profiles conducted concurrently.

Results: Fourteen (14) metabolites were determined as potential biomarkers for cardiovascular risks with receiver operating characteristic of more than 0.7. They include 15S-HETE (AUC = 0.997) and phosphorylcholine (AUC = 0.995). Seven Orang Asli were clustered with the patients' group and may have ongoing cardiovascular risks and problems. This is supported by biochemistry tests results that showed abnormalities in cholesterol, triglyceride, HDL and LDL levels.

Conclusions: The disease prediction model based on metabolites is a useful diagnostic alternative as compared to the current single biomarker assays. The former is believed to be more cost effective since a single sample run is able to provide a more comprehensive disease profile, whilst the latter require different types of sampling tubes and blood volumes.

求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
自引率
0.00%
发文量
0
期刊最新文献
Clinical research informatics (CRI): overview over new tools and services First Clinical Research Informatics (CRI) Solutions Day: advanced IT support from EU projects for clinical trials Mobile eHealth solution (ePRO) EHR4CR local workbench TRANSFoRm Data quality tool
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
已复制链接
已复制链接
快去分享给好友吧!
我知道了
×
扫码分享
扫码分享
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1