结合多晶体和取向数据的流产布鲁氏菌单斜组氨酸激酶的S-SAD相位:数据收集策略的一个例子和不同数据组合的后验分析。

Sebastián Klinke, Nicolas Foos, Jimena J Rinaldi, Gastón Paris, Fernando A Goldbaum, Pierre Legrand, Beatriz G Guimarães, Andrew Thompson
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引用次数: 11

摘要

组氨酸激酶(HK)结构域属于产布鲁氏菌的光氧电压组氨酸激酶(LOV-HK),是HWE家族的成员,没有结构信息,与PDB中最接近的HK序列同源性低(20%)。利用大分子x射线晶体学中的“off-edge”S-SAD方法,在低对称空间群(P21)和不对称单元(~ 108 kDa)中具有四个副本的晶体中,以低分辨率从LOV-HK中求解HK域的结构。数据收集来自多个晶体(衍射极限从2.90到3.25 Å不等)和同一晶体的多个方向,使用SOLEIL光束线PROXIMA 1上的k -几何角定位仪,以获得“真正的冗余”。将三种不同晶体的数据结合起来进行结构测定。经过优化的HK结构含有较短的克隆产物,产生了衍射x射线至2.51 Å分辨率的晶体,并用于模型的最终改进。此外,使用几种不同的数据集组合进行彻底的后验分析,使我们能够调查数据收集策略对结构确定成功的影响。
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S-SAD phasing of monoclinic histidine kinase from Brucella abortus combining data from multiple crystals and orientations: an example of data-collection strategy and a posteriori analysis of different data combinations.

The histidine kinase (HK) domain belonging to the light-oxygen-voltage histidine kinase (LOV-HK) from Brucella abortus is a member of the HWE family, for which no structural information is available, and has low sequence identity (20%) to the closest HK present in the PDB. The `off-edge' S-SAD method in macromolecular X-ray crystallography was used to solve the structure of the HK domain from LOV-HK at low resolution from crystals in a low-symmetry space group (P21) and with four copies in the asymmetric unit (∼108 kDa). Data were collected both from multiple crystals (diffraction limit varying from 2.90 to 3.25 Å) and from multiple orientations of the same crystal, using the κ-geometry goniostat on SOLEIL beamline PROXIMA 1, to obtain `true redundancy'. Data from three different crystals were combined for structure determination. An optimized HK construct bearing a shorter cloning artifact yielded crystals that diffracted X-rays to 2.51 Å resolution and that were used for final refinement of the model. Moreover, a thorough a posteriori analysis using several different combinations of data sets allowed us to investigate the impact of the data-collection strategy on the success of the structure determination.

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