GLISTRboost:将多模态MRI分割、配准和生物物理肿瘤生长建模与梯度增强机相结合,用于胶质瘤分割。

Spyridon Bakas, Ke Zeng, Aristeidis Sotiras, Saima Rathore, Hamed Akbari, Bilwaj Gaonkar, Martin Rozycki, Sarthak Pati, Christos Davatzikos
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引用次数: 20

摘要

我们提出了一种在多模态磁共振成像体积中分割低级别和高级别胶质瘤的方法。该方法基于生成-判别混合模型。首先,采用基于期望最大化框架的生成方法,结合胶质瘤生长模型,将脑部扫描图像分割为肿瘤和健康组织标签。其次,基于多个患者的信息,采用梯度增强多类分类方案对肿瘤标签进行细化;最后,采用概率贝叶斯策略进一步完善和完成基于患者特异性强度统计的肿瘤分割。我们在脑肿瘤分割(BRATS) 2015挑战赛的训练阶段对186例病例进行了评估,并报告了令人鼓舞的结果。在测试阶段,该算法在53个未见情况下进行了额外评估,在竞争方法中获得了最佳性能。
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GLISTRboost: Combining Multimodal MRI Segmentation, Registration, and Biophysical Tumor Growth Modeling with Gradient Boosting Machines for Glioma Segmentation.

We present an approach for segmenting low- and high-grade gliomas in multimodal magnetic resonance imaging volumes. The proposed approach is based on a hybrid generative-discriminative model. Firstly, a generative approach based on an Expectation-Maximization framework that incorporates a glioma growth model is used to segment the brain scans into tumor, as well as healthy tissue labels. Secondly, a gradient boosting multi-class classification scheme is used to refine tumor labels based on information from multiple patients. Lastly, a probabilistic Bayesian strategy is employed to further refine and finalize the tumor segmentation based on patient-specific intensity statistics from the multiple modalities. We evaluated our approach in 186 cases during the training phase of the BRAin Tumor Segmentation (BRATS) 2015 challenge and report promising results. During the testing phase, the algorithm was additionally evaluated in 53 unseen cases, achieving the best performance among the competing methods.

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Leveraging 2D Deep Learning ImageNet-trained models for Native 3D Medical Image Analysis. Brainlesion: Glioma, Multiple Sclerosis, Stroke and Traumatic Brain Injuries: 8th International Workshop, BrainLes 2022, Held in Conjunction with MICCAI 2022, Singapore, September 18, 2022, Revised Selected Papers Optimization of Deep Learning Based Brain Extraction in MRI for Low Resource Environments. Brainlesion: Glioma, Multiple Sclerosis, Stroke and Traumatic Brain Injuries: 7th International Workshop, BrainLes 2021, Held in Conjunction with MICCAI 2021, Virtual Event, September 27, 2021, Revised Selected Papers, Part I Brainlesion: Glioma, Multiple Sclerosis, Stroke and Traumatic Brain Injuries: 7th International Workshop, BrainLes 2021, Held in Conjunction with MICCAI 2021, Virtual Event, September 27, 2021, Revised Selected Papers, Part II
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