Ali M Bazzi, Jaffar A Al-Tawfiq, Ali A Rabaan, Dianne Neal, Aimee Ferraro, Mahmoud M Fawarah
{"title":"基于抗生素的表型和住院记录是MRSA基因分型的最可能预测因子。","authors":"Ali M Bazzi, Jaffar A Al-Tawfiq, Ali A Rabaan, Dianne Neal, Aimee Ferraro, Mahmoud M Fawarah","doi":"10.2174/1874285801711010167","DOIUrl":null,"url":null,"abstract":"<p><strong>Background: </strong>Methicillin-resistant <i>Staphylococcus aureus</i> (MRSA) infection is associated with increased morbidity, mortality, and financial burdens. Phenotyping methods are used to classify MRSA as either health care MRSA (HA-MRSA) or community-associated MRSA (CA-MRSA). Recent studies suggested the phenotyping methods are not always reliable, based on a lack of concordance with genotyping results.</p><p><strong>Objective: </strong>In this study, concordance of classification methods based on clinical characteristics or antibiotic susceptibility compared to the gold standard genotyping was assessed in the classification of MRSA.</p><p><strong>Methods: </strong>We compared the genotypes and phenotypes of MRSA in 133 samples taken from patients in Saudi Arabia. Statistical analyses included concordance, specificity and sensitivity, and logistic regression modeling.</p><p><strong>Results: </strong>There was fair a definite agreement between the health care risk and infection type methods (<i>p</i> < .001), but no statistically significant agreement between the susceptibility pattern and health care risk methods (<i>p</i> = 243), and between susceptibility pattern and infection type methods (<i>p</i> = .919). Reduced multiple regression modelling suggested the potential of a phenotyping-based method of antibiotic susceptibility pattern (OR = 15.47, <i>p</i> < .001) in conjunction with hospital admission profile(OR = 2.87, <i>p</i> = .008) to accurately identify MRSA as HA-MRSA and CA-MRSA.</p><p><strong>Conclusion: </strong>The use of a standardized phenotyping technique, using susceptibility pattern and hospital admission profiles to classify MRSA infections as either HA-MRSA or CA-MRSA, would facilitate diagnosis, infection control efforts, prevention, and assignment of appropriate therapies. The ability to use phenotyping in the classification of these strains would improve efforts to contend with this adept and evolving bacterial organism.</p>","PeriodicalId":38953,"journal":{"name":"Open Microbiology Journal","volume":"11 ","pages":"167-178"},"PeriodicalIF":0.0000,"publicationDate":"2017-09-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5678371/pdf/","citationCount":"1","resultStr":"{\"title\":\"Antibiotic Based Phenotype and Hospital Admission Profile are the Most Likely Predictors of Genotyping Classification of MRSA.\",\"authors\":\"Ali M Bazzi, Jaffar A Al-Tawfiq, Ali A Rabaan, Dianne Neal, Aimee Ferraro, Mahmoud M Fawarah\",\"doi\":\"10.2174/1874285801711010167\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><strong>Background: </strong>Methicillin-resistant <i>Staphylococcus aureus</i> (MRSA) infection is associated with increased morbidity, mortality, and financial burdens. Phenotyping methods are used to classify MRSA as either health care MRSA (HA-MRSA) or community-associated MRSA (CA-MRSA). Recent studies suggested the phenotyping methods are not always reliable, based on a lack of concordance with genotyping results.</p><p><strong>Objective: </strong>In this study, concordance of classification methods based on clinical characteristics or antibiotic susceptibility compared to the gold standard genotyping was assessed in the classification of MRSA.</p><p><strong>Methods: </strong>We compared the genotypes and phenotypes of MRSA in 133 samples taken from patients in Saudi Arabia. Statistical analyses included concordance, specificity and sensitivity, and logistic regression modeling.</p><p><strong>Results: </strong>There was fair a definite agreement between the health care risk and infection type methods (<i>p</i> < .001), but no statistically significant agreement between the susceptibility pattern and health care risk methods (<i>p</i> = 243), and between susceptibility pattern and infection type methods (<i>p</i> = .919). Reduced multiple regression modelling suggested the potential of a phenotyping-based method of antibiotic susceptibility pattern (OR = 15.47, <i>p</i> < .001) in conjunction with hospital admission profile(OR = 2.87, <i>p</i> = .008) to accurately identify MRSA as HA-MRSA and CA-MRSA.</p><p><strong>Conclusion: </strong>The use of a standardized phenotyping technique, using susceptibility pattern and hospital admission profiles to classify MRSA infections as either HA-MRSA or CA-MRSA, would facilitate diagnosis, infection control efforts, prevention, and assignment of appropriate therapies. The ability to use phenotyping in the classification of these strains would improve efforts to contend with this adept and evolving bacterial organism.</p>\",\"PeriodicalId\":38953,\"journal\":{\"name\":\"Open Microbiology Journal\",\"volume\":\"11 \",\"pages\":\"167-178\"},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2017-09-21\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5678371/pdf/\",\"citationCount\":\"1\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Open Microbiology Journal\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/10.2174/1874285801711010167\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"2017/1/1 0:00:00\",\"PubModel\":\"eCollection\",\"JCR\":\"Q3\",\"JCRName\":\"Immunology and Microbiology\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Open Microbiology Journal","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.2174/1874285801711010167","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2017/1/1 0:00:00","PubModel":"eCollection","JCR":"Q3","JCRName":"Immunology and Microbiology","Score":null,"Total":0}
引用次数: 1
摘要
背景:耐甲氧西林金黄色葡萄球菌(MRSA)感染与发病率、死亡率和经济负担增加有关。表型方法用于将MRSA分类为医疗MRSA (HA-MRSA)或社区相关MRSA (CA-MRSA)。最近的研究表明,由于与基因分型结果缺乏一致性,表现型方法并不总是可靠的。目的:在本研究中,比较基于临床特征或抗生素敏感性的分类方法与金标准基因分型方法在MRSA分类中的一致性。方法:我们比较了来自沙特阿拉伯患者的133份MRSA样本的基因型和表型。统计分析包括一致性、特异性和敏感性,以及逻辑回归模型。结果:卫生保健风险与感染类型方法之间存在较为明确的一致性(p < 0.001),而药敏型与卫生保健风险方法之间存在差异(p = 243),药敏型与感染类型方法之间存在差异(p = 0.919)。简化的多元回归模型表明,基于表型的抗生素敏感性模式方法(OR = 15.47, p < .001)结合住院情况(OR = 2.87, p = .008)可以准确地将MRSA鉴定为HA-MRSA和CA-MRSA。结论:使用标准化表型技术,利用易感性模式和住院记录将MRSA感染分类为HA-MRSA或CA-MRSA,将有助于诊断、感染控制、预防和分配适当的治疗。在这些菌株的分类中使用表型的能力将提高与这种熟练和进化的细菌有机体相抗衡的努力。
Antibiotic Based Phenotype and Hospital Admission Profile are the Most Likely Predictors of Genotyping Classification of MRSA.
Background: Methicillin-resistant Staphylococcus aureus (MRSA) infection is associated with increased morbidity, mortality, and financial burdens. Phenotyping methods are used to classify MRSA as either health care MRSA (HA-MRSA) or community-associated MRSA (CA-MRSA). Recent studies suggested the phenotyping methods are not always reliable, based on a lack of concordance with genotyping results.
Objective: In this study, concordance of classification methods based on clinical characteristics or antibiotic susceptibility compared to the gold standard genotyping was assessed in the classification of MRSA.
Methods: We compared the genotypes and phenotypes of MRSA in 133 samples taken from patients in Saudi Arabia. Statistical analyses included concordance, specificity and sensitivity, and logistic regression modeling.
Results: There was fair a definite agreement between the health care risk and infection type methods (p < .001), but no statistically significant agreement between the susceptibility pattern and health care risk methods (p = 243), and between susceptibility pattern and infection type methods (p = .919). Reduced multiple regression modelling suggested the potential of a phenotyping-based method of antibiotic susceptibility pattern (OR = 15.47, p < .001) in conjunction with hospital admission profile(OR = 2.87, p = .008) to accurately identify MRSA as HA-MRSA and CA-MRSA.
Conclusion: The use of a standardized phenotyping technique, using susceptibility pattern and hospital admission profiles to classify MRSA infections as either HA-MRSA or CA-MRSA, would facilitate diagnosis, infection control efforts, prevention, and assignment of appropriate therapies. The ability to use phenotyping in the classification of these strains would improve efforts to contend with this adept and evolving bacterial organism.
期刊介绍:
The Open Microbiology Journal is a peer-reviewed open access journal which publishes research articles, reviews/mini-reviews, case studies, guest edited thematic issues and short communications/letters covering theoretical and practical aspects of Microbial systematics, evolutionary microbiology, immunology, virology, parasitology , bacteriology, mycology, phycology, protozoology, microbial ecology, molecular biology, microbial physiology, biochemistry, microbial pathogenesis, host-microbe interaction, systems microbiology, synthetic microbiology, bioinformatics. The Open Microbiology Journal , a peer-reviewed journal, is an important and reliable source of current information on developments in the field. The emphasis will be on publishing quality papers rapidly and freely available to researchers worldwide.