黑曲霉3-植酸酶A和3-植酸酶B的“计算机”鉴定。

Q2 Biochemistry, Genetics and Molecular Biology Enzyme Research Pub Date : 2017-01-01 Epub Date: 2017-11-20 DOI:10.1155/2017/9746191
Doris C Niño-Gómez, Claudia M Rivera-Hoyos, Edwin D Morales-Álvarez, Edgar A Reyes-Montaño, Nury E Vargas-Alejo, Ingrid N Ramírez-Casallas, Kübra Erkan Türkmen, Homero Sáenz-Suárez, José A Sáenz-Moreno, Raúl A Poutou-Piñales, Janneth González-Santos, Azucena Arévalo-Galvis
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引用次数: 11

摘要

植酸酶用于喂养单胃动物,因为它们水解植酸产生无机磷酸盐。利用生物信息学工具对黑曲霉3-植酸酶A (PDB: 3K4Q)和3-植酸酶B (PDB: 1QFX)进行了表征。结果表明,这两种酶都具有高度保守的催化口袋,支持它们被归类为组氨酸酸性磷酸酶。二维结构由43%的α -螺旋、12%的β -sheet和45%的其他组成,38%的α -螺旋、12%的β -sheet和50%的其他组成,pI分别为4.94和4.60,脂肪指数分别为72.25和70.26,平均疏水性分别为-0,304和-0.330,表明水介质相互作用。糖基化和糖基化位点允许检测可以影响折叠和生物活性的区域,表明碎片化。对接表明H59和H63是亲核试剂,D339和D319是质子供体残基。3K4Q的MW (48.84 kDa)和1QFX的MW (50.78 kDa)相似;1QFX形成同型二聚体,形成具有配体可及的几个催化中心的同型四聚体。3K4Q的稳定性(不稳定性指数为45.41)低于1QFX(不稳定性指数为33.66),但3K4Q的估计寿命优于1QFX。范德华相互作用在活性中心和植酸磷酸基团的O2或H之间产生氢键,为这些时间分子相互作用提供了更大的稳定性。
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"In Silico" Characterization of 3-Phytase A and 3-Phytase B from Aspergillus niger.

Phytases are used for feeding monogastric animals, because they hydrolyze phytic acid generating inorganic phosphate. Aspergillus niger 3-phytase A (PDB: 3K4Q) and 3-phytase B (PDB: 1QFX) were characterized using bioinformatic tools. Results showed that both enzymes have highly conserved catalytic pockets, supporting their classification as histidine acid phosphatases. 2D structures consist of 43% alpha-helix, 12% beta-sheet, and 45% others and 38% alpha-helix, 12% beta-sheet, and 50% others, respectively, and pI 4.94 and 4.60, aliphatic index 72.25 and 70.26 and average hydrophobicity of -0,304 and -0.330, respectively, suggesting aqueous media interaction. Glycosylation and glycation sites allowed detecting zones that can affect folding and biological activity, suggesting fragmentation. Docking showed that H59 and H63 act as nucleophiles and that D339 and D319 are proton donor residues. MW of 3K4Q (48.84 kDa) and 1QFX (50.78 kDa) is similar; 1QFX forms homodimers which will originate homotetramers with several catalytic center accessible to the ligand. 3K4Q is less stable (instability index 45.41) than 1QFX (instability index 33.66), but the estimated lifespan for 3K4Q is superior. Van der Waals interactions generate hydrogen bonds between the active center and O2 or H of the phytic acid phosphate groups, providing greater stability to these temporal molecular interactions.

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Enzyme Research
Enzyme Research Biochemistry, Genetics and Molecular Biology-Biochemistry
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