合成生物学时代的进化修修补补与理性工程。

IF 3.1 Q1 Arts and Humanities Life Sciences, Society and Policy Pub Date : 2018-08-12 DOI:10.1186/s40504-018-0086-x
Víctor de Lorenzo
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引用次数: 13

摘要

合成生物学不仅是对过去30年的重组DNA技术的当代重新表述,还结合了从电气和工业工程中引入的描述性语言。这也是一种解释生命系统的新方法,也是一种为人类利益而使用和重新编程生物物体的意图声明。在这种背景下,设计师生物学的概念经常被呈现为与自然选择相反的观点,这一观点遵循了弗朗索瓦·雅各布关于进化即修补的强有力的理论基础。合成生物学的开始开启了一个不同的视角,它把生物现象的进化起源问题放在一边,转而关注使生物系统正常工作的相关逻辑和相应组成部分的物质特性。一旦功能性挑战出现,问题的解决方案空间就不是同质的,但它有吸引点,可以通过随机探索(如进化)或理性设计(如工程师)来访问。尽管这两条路径(即进化和工程)本质上是不同的,但它们可以为经常重合或汇合的特定机制瓶颈提供解决方案——其中一条可以很容易地帮助理解和改进另一条。唉,关于这些问题的富有成效的讨论常常被意识形态上的先入之见所污染,这些先入之见阻碍了采用工程隐喻来理解并最终重塑生命系统——正如合成生物学所雄心勃勃的那样。然而,克服僵局的一些可能的方法是可行的。与莫诺德的目的论(最终性/目的)vs目的论(最终性/目的的表象)的进化悖论类似,在技术(理性工程)vs技术经济学(理性工程的表象)之间也可以有一个机械性的悖论,这都是为了理解使生命系统在时间和空间中作为物理-化学实体发挥作用的关系逻辑。因此,本文通过工程隐喻的镜头提出了合成生物学的激进愿景。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

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Evolutionary tinkering vs. rational engineering in the times of synthetic biology.

Synthetic biology is not only a contemporary reformulation of the recombinant DNA technologies of the last 30 years, combined with descriptive language imported from electrical and industrial engineering. It is also a new way to interpret living systems and a statement of intent for the use and reprogramming of biological objects for human benefit. In this context, the notion of designer biology is often presented as opposed to natural selection following the powerful rationale formulated by François Jacob on evolution-as-tinkering. The onset of synthetic biology opens a different perspective by leaving aside the question about the evolutionary origin of biological phenomena and focusing instead on the relational logic and the material properties of the corresponding components that make biological system work as they do. Once a functional challenge arises, the solution space for the problem is not homogeneous but it has attractors that can be accessed either through random exploration (as evolution does) or rational design (as engineers do). Although these two paths (i.e. evolution and engineering) are essentially different, they can lead to solutions to specific mechanistic bottlenecks that frequently coincide or converge-and one can easily help to understand and improve the other. Alas, productive discussions on these matters are often contaminated by ideological preconceptions that prevent adoption of the engineering metaphor to understand and ultimately reshape living systems-as ambitioned by synthetic biology. Yet, some possible ways to overcome the impasse are feasible. In parallel to Monod's evolutionary paradox of teleo-logy (finality/purpose) vs. teleo-nomy (appearance of finality/purpose), a mechanistic paradox could be entertained between techno-logy (rational engineering) vs techno-nomy (appearance of rational engineering), all for the sake of understanding the relational logic that enables live systems to function as physico-chemical entities in time and space. This article thus proposes a radical vision of synthetic biology through the lens of the engineering metaphor.

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来源期刊
Life Sciences, Society and Policy
Life Sciences, Society and Policy Arts and Humanities-Philosophy
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审稿时长
18 weeks
期刊介绍: The purpose of Life Sciences, Society and Policy (LSSP) is to analyse social, ethical and legal dimensions of the most dynamic branches of life sciences and technologies, and to discuss ways to foster responsible innovation, sustainable development and user-driven social policies. LSSP provides an academic forum for engaged scholarship at the intersection of life sciences, philosophy, bioethics, science studies and policy research, and covers a broad area of inquiry both in emerging research areas such as genomics, bioinformatics, biophysics, molecular engineering, nanotechnology and synthetic biology, and in more applied fields such as translational medicine, food science, environmental science, climate studies, research on animals, sustainability, science education and others. The goal is to produce insights, tools and recommendations that are relevant not only for academic researchers and teachers, but also for civil society, policy makers and industry, as well as for professionals in education, health care and the media, thus contributing to better research practices, better policies, and a more sustainable global society.
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