Thomas D. Potter, Nicola Haywood, Alexandre Teixeira, Geoff Hodges, Elin L. Barrett and Mark A. Miller
{"title":"分割成磷脂酰胆碱-胆固醇膜:脂质体测量,粗粒度模拟,和影响的生物积累†","authors":"Thomas D. Potter, Nicola Haywood, Alexandre Teixeira, Geoff Hodges, Elin L. Barrett and Mark A. Miller","doi":"10.1039/D3EM00081H","DOIUrl":null,"url":null,"abstract":"<p >Membrane–water partitioning is an important physical property for the assessment of bioaccumulation and environmental impact. Here, we advance simulation methodology for predicting the partitioning of small molecules into lipid membranes and compare the computational predictions to experimental measurements in liposomes. As a step towards high-throughput screening, we present an automated mapping and parametrization procedure to produce coarse-grained models compatible with the Martini 3 force field. The methodology is general and can also be used for other applications where coarse-grained simulations are appropriate. This article addresses the effect on membrane–water partitioning of adding cholesterol to POPC (1-palmitoyl-2-oleoyl-<em>sn</em>-glycero-3-phosphocholine) membranes. Nine contrasting neutral, zwitterionic and charged solutes are tested. Agreement between experiment and simulation is generally good, with the most challenging cases being permanently charged solutes. For all solutes, partitioning is found to be insensitive to membrane cholesterol concentration up to 25% mole fraction. Hence, for assessment of bioaccumulation into a range of membranes (such as those found in fish), partitioning data measured in pure lipid membranes are still informative.</p>","PeriodicalId":74,"journal":{"name":"Environmental Science: Processes & Impacts","volume":" 6","pages":" 1082-1093"},"PeriodicalIF":4.3000,"publicationDate":"2023-05-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://pubs.rsc.org/en/content/articlepdf/2023/em/d3em00081h?page=search","citationCount":"0","resultStr":"{\"title\":\"Partitioning into phosphatidylcholine–cholesterol membranes: liposome measurements, coarse-grained simulations, and implications for bioaccumulation†\",\"authors\":\"Thomas D. Potter, Nicola Haywood, Alexandre Teixeira, Geoff Hodges, Elin L. Barrett and Mark A. Miller\",\"doi\":\"10.1039/D3EM00081H\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p >Membrane–water partitioning is an important physical property for the assessment of bioaccumulation and environmental impact. Here, we advance simulation methodology for predicting the partitioning of small molecules into lipid membranes and compare the computational predictions to experimental measurements in liposomes. As a step towards high-throughput screening, we present an automated mapping and parametrization procedure to produce coarse-grained models compatible with the Martini 3 force field. The methodology is general and can also be used for other applications where coarse-grained simulations are appropriate. This article addresses the effect on membrane–water partitioning of adding cholesterol to POPC (1-palmitoyl-2-oleoyl-<em>sn</em>-glycero-3-phosphocholine) membranes. Nine contrasting neutral, zwitterionic and charged solutes are tested. Agreement between experiment and simulation is generally good, with the most challenging cases being permanently charged solutes. For all solutes, partitioning is found to be insensitive to membrane cholesterol concentration up to 25% mole fraction. Hence, for assessment of bioaccumulation into a range of membranes (such as those found in fish), partitioning data measured in pure lipid membranes are still informative.</p>\",\"PeriodicalId\":74,\"journal\":{\"name\":\"Environmental Science: Processes & Impacts\",\"volume\":\" 6\",\"pages\":\" 1082-1093\"},\"PeriodicalIF\":4.3000,\"publicationDate\":\"2023-05-02\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://pubs.rsc.org/en/content/articlepdf/2023/em/d3em00081h?page=search\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Environmental Science: Processes & Impacts\",\"FirstCategoryId\":\"93\",\"ListUrlMain\":\"https://pubs.rsc.org/en/content/articlelanding/2023/em/d3em00081h\",\"RegionNum\":3,\"RegionCategory\":\"环境科学与生态学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q1\",\"JCRName\":\"CHEMISTRY, ANALYTICAL\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Environmental Science: Processes & Impacts","FirstCategoryId":"93","ListUrlMain":"https://pubs.rsc.org/en/content/articlelanding/2023/em/d3em00081h","RegionNum":3,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"CHEMISTRY, ANALYTICAL","Score":null,"Total":0}
引用次数: 0
摘要
膜-水分配是评价生物积累和环境影响的重要物理性质。在这里,我们提出了预测小分子进入脂质膜的分配的模拟方法,并将计算预测与脂质体的实验测量进行了比较。作为迈向高通量筛选的一步,我们提出了一种自动映射和参数化程序,以产生与Martini 3力场兼容的粗粒度模型。该方法是通用的,也可用于适合粗粒度模拟的其他应用程序。本文研究了在POPC(1-棕榈酰-2-油酰- san -甘油-3-磷脂胆碱)膜中添加胆固醇对膜-水分配的影响。测试了九种不同的中性、两性离子和带电溶质。实验和模拟之间的一致性通常很好,最具挑战性的情况是永久带电的溶质。对于所有溶质,分配被发现是不敏感的膜胆固醇浓度高达25%摩尔分数。因此,为了评估生物积累到一系列膜(如在鱼类中发现的膜),在纯脂质膜中测量的分配数据仍然是有用的。
Partitioning into phosphatidylcholine–cholesterol membranes: liposome measurements, coarse-grained simulations, and implications for bioaccumulation†
Membrane–water partitioning is an important physical property for the assessment of bioaccumulation and environmental impact. Here, we advance simulation methodology for predicting the partitioning of small molecules into lipid membranes and compare the computational predictions to experimental measurements in liposomes. As a step towards high-throughput screening, we present an automated mapping and parametrization procedure to produce coarse-grained models compatible with the Martini 3 force field. The methodology is general and can also be used for other applications where coarse-grained simulations are appropriate. This article addresses the effect on membrane–water partitioning of adding cholesterol to POPC (1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine) membranes. Nine contrasting neutral, zwitterionic and charged solutes are tested. Agreement between experiment and simulation is generally good, with the most challenging cases being permanently charged solutes. For all solutes, partitioning is found to be insensitive to membrane cholesterol concentration up to 25% mole fraction. Hence, for assessment of bioaccumulation into a range of membranes (such as those found in fish), partitioning data measured in pure lipid membranes are still informative.
期刊介绍:
Environmental Science: Processes & Impacts publishes high quality papers in all areas of the environmental chemical sciences, including chemistry of the air, water, soil and sediment. We welcome studies on the environmental fate and effects of anthropogenic and naturally occurring contaminants, both chemical and microbiological, as well as related natural element cycling processes.