脑肿瘤术前和复发后磁共振成像扫描的患者特异性登记。

Xu Han, Spyridon Bakas, Roland Kwitt, Stephen Aylward, Hamed Akbari, Michel Bilello, Christos Davatzikos, Marc Niethammer
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摘要

对包含病变的脑磁共振成像(MRI)扫描进行配准是一项具有挑战性的工作,这主要是由于病变引起的巨大变形导致扫描之间的对应关系缺失。然而,配准任务非常重要,而且与个性化医疗直接相关,因为术前基线扫描和复发后扫描之间的配准可以评估肿瘤浸润和复发情况。虽然有很多配准方法,但其中大多数都没有专门考虑病理因素。在此,我们提出了一种对诊断为胶质母细胞瘤患者的纵向图像进行配准的框架。具体来说,我们提出了一种图像配准/重构组合方法,该方法利用特定患者的图像外观主成分分析(PCA)模型来配准基线术前和复发后脑肿瘤扫描图像。我们的方法利用复发后扫描构建患者特异性模型,然后指导术前扫描的配准。在 10 对患者图像上对我们的框架进行的定量和定性评估表明,它无需(1)任何人工干预或(2)肿瘤位置、生长或外观方面的先验知识,就能提供出色的配准性能。
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Patient-Specific Registration of Pre-operative and Post-recurrence Brain Tumor MRI Scans.

Registering brain magnetic resonance imaging (MRI) scans containing pathologies is challenging primarily due to large deformations caused by the pathologies, leading to missing correspondences between scans. However, the registration task is important and directly related to personalized medicine, as registering between baseline pre-operative and post-recurrence scans may allow the evaluation of tumor infiltration and recurrence. While many registration methods exist, most of them do not specifically account for pathologies. Here, we propose a framework for the registration of longitudinal image-pairs of individual patients diagnosed with glioblastoma. Specifically, we present a combined image registration/reconstruction approach, which makes use of a patient-specific principal component analysis (PCA) model of image appearance to register baseline pre-operative and post-recurrence brain tumor scans. Our approach uses the post-recurrence scan to construct a patient-specific model, which then guides the registration of the pre-operative scan. Quantitative and qualitative evaluations of our framework on 10 patient image-pairs indicate that it provides excellent registration performance without requiring (1) any human intervention or (2) prior knowledge of tumor location, growth or appearance.

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Leveraging 2D Deep Learning ImageNet-trained models for Native 3D Medical Image Analysis. Brainlesion: Glioma, Multiple Sclerosis, Stroke and Traumatic Brain Injuries: 8th International Workshop, BrainLes 2022, Held in Conjunction with MICCAI 2022, Singapore, September 18, 2022, Revised Selected Papers Optimization of Deep Learning Based Brain Extraction in MRI for Low Resource Environments. Brainlesion: Glioma, Multiple Sclerosis, Stroke and Traumatic Brain Injuries: 7th International Workshop, BrainLes 2021, Held in Conjunction with MICCAI 2021, Virtual Event, September 27, 2021, Revised Selected Papers, Part I Brainlesion: Glioma, Multiple Sclerosis, Stroke and Traumatic Brain Injuries: 7th International Workshop, BrainLes 2021, Held in Conjunction with MICCAI 2021, Virtual Event, September 27, 2021, Revised Selected Papers, Part II
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