从基因表达谱了解人类内在无序蛋白†

IF 3.743 Q2 Biochemistry, Genetics and Molecular Biology Molecular BioSystems Pub Date : 2017-10-11 DOI:10.1039/C7MB00311K
Arup Panda, Debarun Acharya and Tapash Chandra Ghosh
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引用次数: 4

摘要

表达水平是研究基因功能的重要线索。以前,根据人类基因的表达水平进行了各种各样的研究。内在无序蛋白质(idp)不采用任何严格的构象在生理条件下,然而,被认为是作为一种重要的功能类在生活的所有领域。基于人类组织平均基因表达水平,先前的研究表明IDPs的表达水平低于有序球状蛋白。在这里,我们检测了32个正常组织中人类有序蛋白和无序蛋白的基因表达模式。我们注意到,在大多数组织中,有序蛋白和无序蛋白的表达水平相似。此外,在许多组织中,发现IDPs的表达水平高于有序蛋白。严格的统计分析表明,较低的组织平均基因表达水平(先前报道)可能是他们在某些特定组织中偏倚的基因表达和较高的蛋白质长度的结果。当我们考虑每个组织的基因库时,我们注意到许多人类组织(脑,睾丸等)选择性地表达更高比例的无序蛋白质,这有助于它们通过形成无序结合基序来维持更高的蛋白质连通性,并维持其功能特异性。我们的研究结果表明,无序蛋白在这些组织中是不可或缺的,因为它们具有功能优势。
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Insights into human intrinsically disordered proteins from their gene expression profile†

Expression level provides important clues about gene function. Previously, various efforts have been undertaken to profile human genes according to their expression level. Intrinsically disordered proteins (IDPs) do not adopt any rigid conformation under physiological conditions, however, are considered as an important functional class in all domains of life. Based on a human tissue-averaged gene expression level, previous studies showed that IDPs are expressed at a lower level than ordered globular proteins. Here, we examined the gene expression pattern of human ordered and disordered proteins in 32 normal tissues. We noticed that in most of the tissues, ordered and disordered proteins are expressed at a similar level. Moreover, in a number of tissues IDPs were found to be expressed at a higher level than ordered proteins. Rigorous statistical analyses suggested that the lower tissue-averaged gene expression level of IDPs (reported earlier) may be the consequence of their biased gene expression in some specific tissues and higher protein length. When we considered the gene repertory of each tissue we noticed that a number of human tissues (brain, testes, etc.) selectively express a higher fraction of disordered proteins, which help them to maintain higher protein connectivity by forming disordered binding motifs and to sustain their functional specificities. Our results demonstrated that the disordered proteins are indispensable in these tissues for their functional advantages.

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来源期刊
Molecular BioSystems
Molecular BioSystems 生物-生化与分子生物学
CiteScore
2.94
自引率
0.00%
发文量
0
审稿时长
2.6 months
期刊介绍: Molecular Omics publishes molecular level experimental and bioinformatics research in the -omics sciences, including genomics, proteomics, transcriptomics and metabolomics. We will also welcome multidisciplinary papers presenting studies combining different types of omics, or the interface of omics and other fields such as systems biology or chemical biology.
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